Aliases for LINC01497 Gene

Subcategory (RNA class) for LINC01497 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01497 Gene

  • Long Intergenic Non-Protein Coding RNA 1497 2 3 5
  • LINC01497 2 5 165
  • NONHSAG022633.2 91
  • HSALNG0118447 164

External Ids for LINC01497 Gene

Summaries for LINC01497 Gene

GeneCards Summary for LINC01497 Gene

LINC01497 (Long Intergenic Non-Protein Coding RNA 1497) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01497 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01497 Gene

Genomics for LINC01497 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01497 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J069960 Promoter/Enhancer 1 EPDnew Ensembl ENCODE 616.7 +0.2 218 2 ATF7 ZNF341 SCRT2 ZSCAN29 SCRT1 POLR2A ATF2 LINC01497 ENSG00000199801 KCNJ16 lnc-ABCA5-10 MAP2K6
GH17J069947 Enhancer 0.7 Ensembl ENCODE 23.7 -14.3 -14263 0.6 NFE2 MAFG ZNF592 ZNF513 ETV1 MAFF NFE2L2 CBFA2T3 ARID1B EMSY LINC01497 ABCA5 piR-31199-143 KCNJ16 lnc-ABCA5-10 MAP2K6
GH17J069967 Enhancer 0.5 Ensembl ENCODE 24.9 +6.4 6397 1.3 CEBPB FOS LINC01497 ENSG00000199801 KCNJ16 lnc-ABCA5-10 MAP2K6
GH17J069951 Enhancer 0.5 ENCODE 20.6 -10.3 -10293 0.2 NR2C1 TAL1 NR2F6 ZNF384 CBFA2T3 PKNOX1 LINC01497 piR-31199-143 KCNJ16 lnc-ABCA5-10 MAP2K6
GH17J069869 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 9.9 -91.0 -90967 3.2 CEBPB ZNF316 MAFF FOS JUNB SPI1 BATF MAFK JUND JUN LINC01497 piR-49097-049 piR-31199-143 KCNJ16 LINC01483 MAP2K6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01497 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01497 Gene

Genomic Locations for LINC01497 Gene
chr17:69,961,568-69,994,845
(GRCh38/hg38)
Size:
33,278 bases
Orientation:
Plus strand
chr17:67,957,848-67,979,679
(GRCh37/hg19)
Size:
21,832 bases
Orientation:
Plus strand

Genomic View for LINC01497 Gene

Genes around LINC01497 on UCSC Golden Path with GeneCards custom track
LINC01497 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01497 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01497 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01497 Gene

Proteins for LINC01497 Gene

Post-translational modifications for LINC01497 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01497 Gene

Domains & Families for LINC01497 Gene

Gene Families for LINC01497 Gene

genes like me logo Genes that share domains with LINC01497: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01497 Gene

Function for LINC01497 Gene

Phenotypes From GWAS Catalog for LINC01497 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01497 Gene

Localization for LINC01497 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01497 Gene

Pathways & Interactions for LINC01497 Gene

PathCards logo

SuperPathways for LINC01497 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01497 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01497 Gene

Drugs & Compounds for LINC01497 Gene

No Compound Related Data Available

Transcripts for LINC01497 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01497 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075CD1C_9606 lncRNA 726 4

HGNC: 51163,

RefSeq: NR_110874,

LncBook: HSALNT0244514,

LNCipedia: LINC01497:3,

URS000075E9FC_9606 lncRNA 699 2

RefSeq: NR_110875,

LNCipedia: LINC01497:2,

URS0000EEF056_9606 lncRNA 1615 1

Ensembl: ENST00000654711 (view in UCSC) ,

URS0000DBAC79_9606 lncRNA 1319 1

Ensembl: ENST00000649355 (view in UCSC) ,

URS0000EEB760_9606 lncRNA 839 1

Ensembl: ENST00000455460 (view in UCSC) ,

LINC01497 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01497 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01497 Gene

No ASD Table

Relevant External Links for LINC01497 Gene

GeneLoc Exon Structure for
LINC01497

Expression for LINC01497 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01497 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01497

genes like me logo Genes that share expression patterns with LINC01497: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01497 Gene

Orthologs for LINC01497 Gene

Evolution for LINC01497 Gene

ENSEMBL:
Gene Tree for LINC01497 (if available)
TreeFam:
Gene Tree for LINC01497 (if available)

No data available for Orthologs for LINC01497 Gene

Paralogs for LINC01497 Gene

No data available for Paralogs for LINC01497 Gene

Variants for LINC01497 Gene

Additional dbSNP identifiers (rs#s) for LINC01497 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01497 Gene

Variant ID Type Subtype PubMed ID
dgv1801e59 CNV tandem duplication 20981092
esv2473047 CNV deletion 19546169
esv2758702 CNV loss 17122850
esv3399187 CNV duplication 20981092
nsv1142228 CNV tandem duplication 24896259

Additional Variant Information for LINC01497 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01497

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01497 Gene

Disorders for LINC01497 Gene

No disorders were found for LINC01497 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01497 Gene

Publications for LINC01497 Gene

No publications were found for LINC01497 Gene.

Products for LINC01497 Gene

Sources for LINC01497 Gene