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Aliases for LINC01497 Gene
Subcategory (RNA class) for LINC01497 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LINC01497 Gene
External Ids for LINC01497 Gene
- HGNC: 51163
- Entrez Gene: 102723487
- Ensembl: ENSG00000237560
Summaries for LINC01497 Gene
GeneCards Summary for LINC01497 Gene
LINC01497 (Long Intergenic Non-Protein Coding RNA 1497) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC01497 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01497 Gene
Genomics for LINC01497 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01497 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH17J069960 | Promoter/Enhancer | 1 | EPDnew Ensembl ENCODE | 616.7 | +0.2 | 218 | 2 | ATF7 ZNF341 SCRT2 ZSCAN29 SCRT1 POLR2A ATF2 | LINC01497 ENSG00000199801 KCNJ16 lnc-ABCA5-10 MAP2K6 | |
| GH17J069947 | Enhancer | 0.7 | Ensembl ENCODE | 23.7 | -14.3 | -14263 | 0.6 | NFE2 MAFG ZNF592 ZNF513 ETV1 MAFF NFE2L2 CBFA2T3 ARID1B EMSY | LINC01497 ABCA5 piR-31199-143 KCNJ16 lnc-ABCA5-10 MAP2K6 | |
| GH17J069967 | Enhancer | 0.5 | Ensembl ENCODE | 24.9 | +6.4 | 6397 | 1.3 | CEBPB FOS | LINC01497 ENSG00000199801 KCNJ16 lnc-ABCA5-10 MAP2K6 | |
| GH17J069951 | Enhancer | 0.5 | ENCODE | 20.6 | -10.3 | -10293 | 0.2 | NR2C1 TAL1 NR2F6 ZNF384 CBFA2T3 PKNOX1 | LINC01497 piR-31199-143 KCNJ16 lnc-ABCA5-10 MAP2K6 | |
| GH17J069869 | Enhancer | 0.9 | Ensembl ENCODE CraniofacialAtlas | 9.9 | -91.0 | -90967 | 3.2 | CEBPB ZNF316 MAFF FOS JUNB SPI1 BATF MAFK JUND JUN | LINC01497 piR-49097-049 piR-31199-143 KCNJ16 LINC01483 MAP2K6 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01497 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01497 Gene
Genomic Locations for LINC01497 Gene
- chr17:69,961,568-69,994,845
- (GRCh38/hg38)
- Size:
- 33,278 bases
- Orientation:
- Plus strand
- chr17:67,957,848-67,979,679
- (GRCh37/hg19)
- Size:
- 21,832 bases
- Orientation:
- Plus strand
Genomic View for LINC01497 Gene
Genes around LINC01497 on UCSC Golden Path with GeneCards custom track
LINC01497 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 17q24.3 by HGNC
- 17q24.3 by Entrez Gene
- 17q24.3 by Ensembl
LINC01497 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01497 Gene
Proteins for LINC01497 Gene
Post-translational modifications for LINC01497 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01497
- Origene Custom Protein Services for LINC01497
No data available for DME Specific Peptides for LINC01497 Gene
Domains & Families for LINC01497 Gene
Gene Families for LINC01497 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01497 Gene
Function for LINC01497 Gene
Phenotypes From GWAS Catalog for LINC01497 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for LINC01497
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01497 Gene
Localization for LINC01497 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01497 Gene
Transcripts for LINC01497 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01497 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075CD1C_9606 | lncRNA | 726 | 4 |
HGNC: 51163, RefSeq: NR_110874, LncBook: HSALNT0244514, LNCipedia: LINC01497:3, |
| URS000075E9FC_9606 | lncRNA | 699 | 2 |
RefSeq: NR_110875, LNCipedia: LINC01497:2, |
| URS0000EEF056_9606 | lncRNA | 1615 | 1 |
Ensembl: ENST00000654711 (view in UCSC) , |
| URS0000DBAC79_9606 | lncRNA | 1319 | 1 |
Ensembl: ENST00000649355 (view in UCSC) , |
| URS0000EEB760_9606 | lncRNA | 839 | 1 |
Ensembl: ENST00000455460 (view in UCSC) , |
LINC01497 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01497 Gene
- 2 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for LINC01497
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LINC01497 Gene
- GeneLoc Exon Structure for
- LINC01497
Expression for LINC01497 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01497
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01497 Gene
Orthologs for LINC01497 Gene
No data available for Orthologs for LINC01497 Gene
Paralogs for LINC01497 Gene
No data available for Paralogs for LINC01497 Gene
Variants for LINC01497 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1801e59 | CNV | tandem duplication | 20981092 |
| esv2473047 | CNV | deletion | 19546169 |
| esv2758702 | CNV | loss | 17122850 |
| esv3399187 | CNV | duplication | 20981092 |
| nsv1142228 | CNV | tandem duplication | 24896259 |
Additional Variant Information for LINC01497 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01497
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01497 Gene
Disorders for LINC01497 Gene
Additional Disease Information for LINC01497
No disorders were found for LINC01497 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01497 Gene
Publications for LINC01497 Gene
No publications were found for LINC01497 Gene.
Products for LINC01497 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01497
- Origene Custom Protein Services for LINC01497
- Browse OriGene Inhibitory RNA Products For LINC01497
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01497
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01497
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01497
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01497
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01497
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01497
Sources for LINC01497 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB