Aliases for LINC01495 Gene

Subcategory (RNA class) for LINC01495 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01495 Gene

  • Long Intergenic Non-Protein Coding RNA 1495 2 3 5
  • LINC01495 2 168
  • HSALNG0083139 167
  • NONHSAG007850 92

External Ids for LINC01495 Gene

Summaries for LINC01495 Gene

GeneCards Summary for LINC01495 Gene

LINC01495 (Long Intergenic Non-Protein Coding RNA 1495) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01495 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01495 Gene

Genomics for LINC01495 Gene

GeneHancer (GH) Regulatory Elements for LINC01495 Gene

Promoters and enhancers for LINC01495 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J022492 Enhancer 0.6 Ensembl CraniofacialAtlas 510.7 +0.2 232 1.2 REST POLR2A RCOR1 SMARCA4 CHD2 EZH2 LINC01495 ENSG00000255357 LOC105376588 LOC105376589 lnc-SLC17A6-1
GH11J022370 Enhancer 0.6 Ensembl ENCODE 7.6 +120.9 120872 1.6 TEAD4 YY1 NANOG SIN3A CHD7 LINC01495 ENSG00000254540 SLC17A6 lnc-SLC17A6-1
GH11J022510 Enhancer 0.6 Ensembl ENCODE 7.6 -18.8 -18775 1.3 FOS STAT3 MYC LINC01495 piR-37026-085 ENSG00000255357 LOC105376588
GH11J022508 Enhancer 0.5 Ensembl CraniofacialAtlas 6.6 -16.6 -16628 1 POLR2A SMARCA4 LINC01495 ENSG00000255357 LOC105376588 piR-37026-085
GH11J022466 Enhancer 0.7 Ensembl ENCODE 4.6 +25.2 25236 2.1 JUND FOS CREB1 EZH2 MAFK STAT3 ATF2 BHLHE40 CEBPB LINC01495 lnc-SLC17A6-1 ENSG00000254540
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01495 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01495 Gene

Genomic Locations for LINC01495 Gene
chr11:22,445,672-22,492,073
(GRCh38/hg38)
Size:
46,402 bases
Orientation:
Minus strand

Genomic View for LINC01495 Gene

Genes around LINC01495 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01495 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01495 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01495 Gene

Proteins for LINC01495 Gene

Post-translational modifications for LINC01495 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01495 Gene

Domains & Families for LINC01495 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01495 Gene

Function for LINC01495 Gene

Phenotypes From GWAS Catalog for LINC01495 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01495 Gene

Localization for LINC01495 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01495 Gene

Pathways & Interactions for LINC01495 Gene

PathCards logo

SuperPathways for LINC01495 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01495 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01495 Gene

Drugs & Compounds for LINC01495 Gene

No Compound Related Data Available

Transcripts for LINC01495 Gene

mRNA/cDNA for LINC01495 Gene

10 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
4 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01495 Gene

No ASD Table

Relevant External Links for LINC01495 Gene

GeneLoc Exon Structure for
LINC01495

Expression for LINC01495 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01495 Gene

genes like me logo Genes that share expression patterns with LINC01495: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01495 Gene

Orthologs for LINC01495 Gene

Evolution for LINC01495 Gene

ENSEMBL:
Gene Tree for LINC01495 (if available)
TreeFam:
Gene Tree for LINC01495 (if available)

No data available for Orthologs for LINC01495 Gene

Paralogs for LINC01495 Gene

No data available for Paralogs for LINC01495 Gene

Variants for LINC01495 Gene

Additional dbSNP identifiers (rs#s) for LINC01495 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01495 Gene

Variant ID Type Subtype PubMed ID
dgv1690n54 CNV loss 21841781
dgv1691n54 CNV loss 21841781
dgv1692n54 CNV loss 21841781
esv1001971 CNV deletion 20482838
esv1005473 CNV loss 20482838
esv1007443 CNV loss 20482838
esv2675160 CNV deletion 23128226
esv27519 CNV loss 19812545
esv3258274 CNV deletion 24192839
esv3547437 CNV deletion 23714750
esv3625615 CNV gain 21293372
esv3625618 CNV loss 21293372
esv990585 CNV deletion 20482838
nsv1038630 CNV loss 25217958
nsv553729 CNV loss 21841781
nsv553730 CNV loss 21841781
nsv553731 CNV loss 21841781
nsv553734 CNV loss 21841781
nsv553735 CNV loss 21841781
nsv7707 CNV deletion 18451855

Additional Variant Information for LINC01495 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01495

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01495 Gene

Disorders for LINC01495 Gene

Additional Disease Information for LINC01495

No disorders were found for LINC01495 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01495 Gene

Publications for LINC01495 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 54

No data available for Mastermind for LINC01495 Gene

Products for LINC01495 Gene

Sources for LINC01495 Gene