Aliases for LINC01494 Gene

Data sources for LINC01494 Gene:

RNA type for LINC01494 Gene

lncRNA

Aliases for LINC01494 Gene

External Ids for LINC01494 Gene

Summaries for LINC01494 Gene

GeneCards Summary for LINC01494 Gene

LINC01494 (Long Intergenic Non-Protein Coding RNA 1494) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01494 include Glioblastoma.

Rfam classification for LINC01494 Gene

Additional gene information for LINC01494 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LINC01494 Gene

Genomics for LINC01494 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01494 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J218908 Promoter/Enhancer 1.8 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 +21.0 21001 2.3 BCLAF1 SP1 MYC ZNF600 ZNF580 ZNF592 ZMYM3 KLF9 POLR2A ZNF10 HSALNG0022314-001 HSALNG0022314-002 lnc-WNT10A-4 STK36 ZNF142 CNOT9 AAMP OBSL1 CDK5R2 ENSG00000235024
GH02J218904 Enhancer 0.3 Ensembl 0.3 +26.2 26236 0.4 MAFK lnc-WNT10A-2 WNT10A WNT6 CDK5R2 ENSG00000235024 LOC100129175 MIR375 OBSL1 PLCD4 lnc-WNT10A-3
GH02J218911 Enhancer 0.2 Ensembl 0.4 +19.1 19136 0.2 CDK5R2 ENSG00000235024 LINC00608 FEV CRYBA2 PRKAG3 IHH HSALNG0022314-001 HSALNG0022314-002 lnc-WNT10A-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01494 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01494 Gene

Latest Assembly
chr2:218,899,509-218,930,637
(GRCh38/hg38)
Size:
31,129 bases
Orientation:
Minus strand

Previous Assembly
chr2:219,765,536-219,795,359
(GRCh37/hg19 by Entrez Gene)
Size:
29,824 bases
Orientation:
Minus strand

chr2:219,765,533-219,795,358
(GRCh37/hg19 by Ensembl)
Size:
29,826 bases
Orientation:
Minus strand

Genomic View for LINC01494 Gene

Genes around LINC01494 on UCSC Golden Path with GeneCards custom track
LINC01494 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01494 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01494 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01494 Gene

Proteins for LINC01494 Gene

Post-translational modifications for LINC01494 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01494 Gene

Domains & Families for LINC01494 Gene

Gene Families for LINC01494 Gene

genes like me logo Genes that share domains with LINC01494: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01494 Gene

Function for LINC01494 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01494 Gene

Localization for LINC01494 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01494 Gene

Pathways & Interactions for LINC01494 Gene

PathCards logo

SuperPathways for LINC01494 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01494 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01494 Gene

Drugs & Compounds for LINC01494 Gene

No Compound Related Data Available

Transcripts for LINC01494 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01494 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000029A3D8_9606 lncRNA 1016 3

Ensembl: ENST00000419511 (view in UCSC) ,

LNCipedia: LINC01494:2,

NONCODE: NONHSAT076954.2,

URS000075CB78_9606 lncRNA 1014 2

RefSeq: NR_110238,

LNCipedia: LINC01494:9,

URS00009B69FB_9606 lncRNA 1011 2

LncBook: HSALNT0047354,

NONCODE: NONHSAT186322.1,

URS0000D59238_9606 lncRNA 17358 1

LNCipedia: LINC01494:4,

URS0001BD6605_9606 lncRNA 2745 1

LncBook: HSALNT0047351,

LINC01494 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01494 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01494 Gene

No ASD Table

Relevant External Links for LINC01494 Gene

GeneLoc Exon Structure for
LINC01494

Expression for LINC01494 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01494 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01494

genes like me logo Genes that share expression patterns with LINC01494: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01494 Gene

Orthologs for LINC01494 Gene

Evolution for LINC01494 Gene

ENSEMBL:
Gene Tree for LINC01494 (if available)
TreeFam:
Gene Tree for LINC01494 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01494

No data available for Orthologs for LINC01494 Gene

Paralogs for LINC01494 Gene

No data available for Paralogs for LINC01494 Gene

Variants for LINC01494 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01494 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01494 Gene

Variant ID Type Subtype PubMed ID
dgv7296n54 CNV loss 21841781
esv3584353 CNV loss 25503493
esv3584354 CNV loss 25503493
nsv584491 CNV loss 21841781
nsv834542 CNV gain 17160897

Additional Variant Information for LINC01494 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01494
Leiden Open Variation Database (LOVD)
LINC01494

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01494 Gene

Disorders for LINC01494 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01494 Gene - From: LNC

Disorder Aliases PubMed IDs
glioblastoma
  • adult glioblastoma multiforme
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01494

genes like me logo Genes that share disorders with LINC01494: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01494 Gene

Publications for LINC01494 Gene

  1. LncRNA and mRNA interaction study based on transcriptome profiles reveals potential core genes in the pathogenesis of human glioblastoma multiforme. (PMID: 25378224) Yan Y … Lu Y (Journal of cancer research and clinical oncology 2015) 72

Products for LINC01494 Gene

Sources for LINC01494 Gene