Aliases for LINC01487 Gene

Subcategory (RNA class) for LINC01487 Gene

lncRNA

Number of RNA Genes sources:

4 / 14

Aliases for LINC01487 Gene

  • Long Intergenic Non-Protein Coding RNA 1487 2 3 5
  • LINC01487 2 168
  • HSALNG0030002 167
  • NONHSAG036455 92

External Ids for LINC01487 Gene

Summaries for LINC01487 Gene

GeneCards Summary for LINC01487 Gene

LINC01487 (Long Intergenic Non-Protein Coding RNA 1487) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01487 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01487 Gene

Genomics for LINC01487 Gene

GeneHancer (GH) Regulatory Elements for LINC01487 Gene

Promoters and enhancers for LINC01487 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J155240 Enhancer 0.3 ENCODE CraniofacialAtlas 506.7 +0.5 546 2.4 LINC01487 MME lnc-MME-5
GH03J155231 Enhancer 1 Ensembl ENCODE 7 -7.8 -7801 2.6 JUND FOS CTBP1 ZNF316 NFIC CEBPG CEBPB ZBTB33 NFE2 FOSL1 MME-AS1 LINC01487 STRIT1 HSALNG0030000
GH03J155252 Enhancer 0.6 Ensembl 6.8 +11.6 11582 0.2 JUND NFIC FOS FOSL1 EHMT2 DPF2 MEIS2 JUN ATF3 ARID1B MME STRIT1 LINC01487 lnc-MME-5 piR-46381-056 lnc-PLCH1-5
GH03J155243 Enhancer 0.7 ENCODE 0.7 +2.5 2548 0.6 FOS ZNF316 MAFK ZNF592 NFE2 NR2F1 NFE2L1 MAFG ZNF639 PRDM10 LINC01487 lnc-MME-5
GH03J155270 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.3 +29.9 29900 1.9 ZNF217 CTCF CLOCK RFX1 CUX1 CTBP1 NFRKB RELA ZNF316 NFIC STRIT1 lnc-MME-6 lnc-PLCH1-5 piR-46381-056 LINC01487
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01487 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01487 Gene

Genomic Locations for LINC01487 Gene
chr3:155,240,919-155,280,452
(GRCh38/hg38)
Size:
39,534 bases
Orientation:
Plus strand
chr3:154,958,734-154,960,933
(GRCh37/hg19)
Size:
2,200 bases
Orientation:
Plus strand

Genomic View for LINC01487 Gene

Genes around LINC01487 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01487 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01487 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01487 Gene

Proteins for LINC01487 Gene

Post-translational modifications for LINC01487 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01487 Gene

Domains & Families for LINC01487 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01487 Gene

Function for LINC01487 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01487 Gene

Localization for LINC01487 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01487 Gene

Pathways & Interactions for LINC01487 Gene

PathCards logo

SuperPathways for LINC01487 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01487 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01487 Gene

Drugs & Compounds for LINC01487 Gene

No Compound Related Data Available

Transcripts for LINC01487 Gene

mRNA/cDNA for LINC01487 Gene

18 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
7 NONCODE transcripts :
1 ENA transcripts :
5 LncBook transcripts :
10 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01487 Gene

No ASD Table

Relevant External Links for LINC01487 Gene

GeneLoc Exon Structure for
LINC01487

Expression for LINC01487 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01487 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01487

genes like me logo Genes that share expression patterns with LINC01487: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01487 Gene

Orthologs for LINC01487 Gene

Evolution for LINC01487 Gene

ENSEMBL:
Gene Tree for LINC01487 (if available)
TreeFam:
Gene Tree for LINC01487 (if available)

No data available for Orthologs for LINC01487 Gene

Paralogs for LINC01487 Gene

No data available for Paralogs for LINC01487 Gene

Variants for LINC01487 Gene

Additional dbSNP identifiers (rs#s) for LINC01487 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01487 Gene

Variant ID Type Subtype PubMed ID
esv3598267 CNV loss 21293372
nsv829762 CNV gain 17160897

Additional Variant Information for LINC01487 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01487

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01487 Gene

Disorders for LINC01487 Gene

Additional Disease Information for LINC01487

No disorders were found for LINC01487 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01487 Gene

Publications for LINC01487 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LINC01487 Gene

Products for LINC01487 Gene

Sources for LINC01487 Gene