Aliases for LINC01485 Gene

Subcategory (RNA class) for LINC01485 Gene

lncRNA

Quality Score for this RNA gene is

16

Aliases for LINC01485 Gene

  • Long Intergenic Non-Protein Coding RNA 1485 2 3 5
  • HSALNG0046725 169
  • NONHSAG042273 94
  • CTB-43E15.4 3
  • Lnc-BOD1-1 170
  • LINC01485 2

External Ids for LINC01485 Gene

Summaries for LINC01485 Gene

GeneCards Summary for LINC01485 Gene

LINC01485 (Long Intergenic Non-Protein Coding RNA 1485) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01485 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01485 Gene

Genomics for LINC01485 Gene

GeneHancer (GH) Regulatory Elements for LINC01485 Gene

Promoters and enhancers for LINC01485 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J173808 Promoter/Enhancer 1 Ensembl ENCODE 756.2 +0.4 427 0.9 SMARCE1 L3MBTL2 MAX MTA1 EGR1 DPF2 CEBPB HDAC1 MTA2 EP300 LINC01485 lnc-CPEB4-7 lnc-CPEB4-1
GH05J173807 Promoter/Enhancer 0.5 Ensembl dbSUPER 750.6 +1.1 1139 0.2 LINC01485 lnc-CPEB4-1 lnc-CPEB4-7
GH05J173788 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 6.6 +19.4 19434 3.2 FOXA1 RBPJ NR2F6 MYC RAD21 MAX MNT ELF3 SP1 CREM LINC01485 lnc-CPEB4-1 lnc-CPEB4-7
GH05J173940 Enhancer 1.1 ENCODE dbSUPER 5.9 -135.4 -135442 7 ZBTB40 MLX RBPJ NR2F1 ATF1 NR2F6 CREB1 MIXL1 ZNF652 MNT NSG2 C5orf47 BOD1 ENSG00000253244 LINC01485 RF00017-5119 HSALNG0046732 CPEB4
GH05J173792 Enhancer 1 ENCODE dbSUPER 6.2 +14.5 14509 3.7 MYC HLF MNT ELF3 CEBPG ZNF24 KAT8 ZNF644 CEBPA GATAD2A LINC01485 lnc-CPEB4-1 lnc-CPEB4-7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01485 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01485 Gene

Genomic Locations for LINC01485 Gene
chr5:173,778,527-173,809,040
(GRCh38/hg38)
Size:
30,514 bases
Orientation:
Minus strand
chr5:173,213,793-173,236,042
(GRCh37/hg19)
Size:
22,250 bases
Orientation:
Minus strand

Genomic View for LINC01485 Gene

Genes around LINC01485 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01485 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01485 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01485 Gene

Proteins for LINC01485 Gene

Post-translational modifications for LINC01485 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01485 Gene

Domains & Families for LINC01485 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01485 Gene

Function for LINC01485 Gene

Phenotypes From GWAS Catalog for LINC01485 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01485 Gene

Localization for LINC01485 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01485 Gene

Pathways & Interactions for LINC01485 Gene

PathCards logo

SuperPathways for LINC01485 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01485 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01485 Gene

Drugs & Compounds for LINC01485 Gene

No Compound Related Data Available

Transcripts for LINC01485 Gene

mRNA/cDNA for LINC01485 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(17) RNACentral transcripts :
(9) LncBook transcripts :
(10) NONCODE transcripts :
(1) ENA transcripts :
(15) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01485 Gene

No ASD Table

Relevant External Links for LINC01485 Gene

GeneLoc Exon Structure for
LINC01485
ECgene alternative splicing isoforms for
LINC01485

Expression for LINC01485 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01485 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01485 Gene:

LINC01485
genes like me logo Genes that share expression patterns with LINC01485: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01485 Gene

Orthologs for LINC01485 Gene

Evolution for LINC01485 Gene

ENSEMBL:
Gene Tree for LINC01485 (if available)
TreeFam:
Gene Tree for LINC01485 (if available)

No data available for Orthologs for LINC01485 Gene

Paralogs for LINC01485 Gene

No data available for Paralogs for LINC01485 Gene

Variants for LINC01485 Gene

Sequence variations from dbSNP and Humsavar for LINC01485 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000346107 -- 173,787,017(-) T/C non_coding_transcript_variant
rs1000698338 -- 173,786,864(-) G/A non_coding_transcript_variant
rs1001090253 -- 173,790,792(-) G/A intron_variant
rs1001801576 -- 173,786,292(-) G/A downstream_transcript_variant
rs1002407759 -- 173,791,250(-) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01485 Gene

Variant ID Type Subtype PubMed ID
nsv5135 CNV insertion 18451855
nsv600298 CNV gain 21841781

Additional Variant Information for LINC01485 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01485

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01485 Gene

Disorders for LINC01485 Gene

Additional Disease Information for LINC01485

No disorders were found for LINC01485 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01485 Gene

Publications for LINC01485 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  2. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3 56

Products for LINC01485 Gene

Sources for LINC01485 Gene