Aliases for LINC01484 Gene

Subcategory (RNA class) for LINC01484 Gene

lncRNA

Quality Score for this RNA gene is

16

Aliases for LINC01484 Gene

  • Long Intergenic Non-Protein Coding RNA 1484 2 3 5
  • HSALNG0046718 169
  • NONHSAG042273 94
  • CTB-43E15.3 3
  • Lnc-BOD1-1 170
  • LINC01484 2

External Ids for LINC01484 Gene

Summaries for LINC01484 Gene

GeneCards Summary for LINC01484 Gene

LINC01484 (Long Intergenic Non-Protein Coding RNA 1484) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01484 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01484 Gene

Genomics for LINC01484 Gene

GeneHancer (GH) Regulatory Elements for LINC01484 Gene

Promoters and enhancers for LINC01484 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J173742 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 750.6 +1.1 1124 4.4 ZNF24 SMARCE1 POLR2A ETV6 ZNF148 BACH1 ZNF687 SMARCA4 CREM PPARG BOD1 LINC01484 piR-57801-020 piR-41195-021
GH05J173733 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +9.8 9790 6.2 SP1 POLR2A NR2F1 MIXL1 ETV6 RELA HLF TEAD4 ZNF148 ELF3 BOD1 LINC01484 piR-41195-021
GH05J173740 Enhancer 0.9 FANTOM5 ENCODE 0.6 +4.4 4400 1.8 NR2F6 CEBPG IKZF1 ZIC2 CEBPA IKZF2 GATAD2A PKNOX1 EED HDGF BOD1 LINC01484 piR-41195-021
GH05J173727 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +17.8 17750 2.1 L3MBTL2 MAX SP1 TFE3 ZNF644 IKZF1 SOX13 TCF7 SAP130 RCOR1 BOD1 piR-41195-021 LINC01484
GH05J173704 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 +39.6 39628 3.3 MYC ZIC2 PKNOX1 ZNF24 IKZF1 POLR2A EBF1 ZFP91 BOD1 ENSG00000253244 lnc-CPEB4-8 LINC01942 LINC01484
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01484 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01484 Gene

Genomic Locations for LINC01484 Gene
chr5:173,703,918-173,746,279
(GRCh38/hg38)
Size:
42,362 bases
Orientation:
Minus strand
chr5:173,134,617-173,173,214
(GRCh37/hg19)
Size:
38,598 bases
Orientation:
Minus strand

Genomic View for LINC01484 Gene

Genes around LINC01484 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01484 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01484 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01484 Gene

Proteins for LINC01484 Gene

Post-translational modifications for LINC01484 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01484 Gene

Domains & Families for LINC01484 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01484 Gene

Function for LINC01484 Gene

Phenotypes From GWAS Catalog for LINC01484 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01484 Gene

Localization for LINC01484 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01484 Gene

Pathways & Interactions for LINC01484 Gene

PathCards logo

SuperPathways for LINC01484 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01484 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01484 Gene

Drugs & Compounds for LINC01484 Gene

No Compound Related Data Available

Transcripts for LINC01484 Gene

mRNA/cDNA for LINC01484 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(27) RNACentral transcripts :
(7) LncBook transcripts :
(23) LNCipedia transcripts :
(1) ENA transcripts :
(12) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01484 Gene

No ASD Table

Relevant External Links for LINC01484 Gene

GeneLoc Exon Structure for
LINC01484
ECgene alternative splicing isoforms for
LINC01484

Expression for LINC01484 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01484 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01484 Gene:

LINC01484
genes like me logo Genes that share expression patterns with LINC01484: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01484 Gene

Orthologs for LINC01484 Gene

Evolution for LINC01484 Gene

ENSEMBL:
Gene Tree for LINC01484 (if available)
TreeFam:
Gene Tree for LINC01484 (if available)

No data available for Orthologs for LINC01484 Gene

Paralogs for LINC01484 Gene

No data available for Paralogs for LINC01484 Gene

Variants for LINC01484 Gene

Sequence variations from dbSNP and Humsavar for LINC01484 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000052258 -- 173,735,688(-) T/G intron_variant
rs1000123110 -- 173,719,355(-) G/A intron_variant
rs1000178059 -- 173,743,240(-) G/A intron_variant
rs1000258900 -- 173,716,785(-) G/T intron_variant
rs1000260412 -- 173,739,007(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01484 Gene

Variant ID Type Subtype PubMed ID
esv24711 CNV loss 19812545
esv2731121 CNV deletion 23290073
esv2731122 CNV deletion 23290073
esv3302531 CNV tandem duplication 20981092
esv3302786 CNV tandem duplication 20981092
esv3374068 CNV duplication 20981092
esv34083 CNV loss 18971310
nsv600298 CNV gain 21841781

Additional Variant Information for LINC01484 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01484

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01484 Gene

Disorders for LINC01484 Gene

Additional Disease Information for LINC01484

No disorders were found for LINC01484 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01484 Gene

Publications for LINC01484 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

Products for LINC01484 Gene

Sources for LINC01484 Gene