Aliases for LINC01482 Gene

Subcategory (RNA class) for LINC01482 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01482 Gene

  • Long Intergenic Non-Protein Coding RNA 1482 2 3 5
  • LINC01482 2 168
  • HSALNG0118377 167
  • NONHSAG022600 92

External Ids for LINC01482 Gene

Summaries for LINC01482 Gene

GeneCards Summary for LINC01482 Gene

LINC01482 (Long Intergenic Non-Protein Coding RNA 1482) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01482 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01482 Gene

Genomics for LINC01482 Gene

GeneHancer (GH) Regulatory Elements for LINC01482 Gene

Promoters and enhancers for LINC01482 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J068591 Promoter/Enhancer 0.9 Ensembl ENCODE 500.7 -0.2 -191 0.4 NRF1 POLR2A GABPA TFDP1 ZNF639 VEZF1 MEIS2 ZBTB33 PAF1 GABPB1 LINC01482 FAM20A LOC105371873
GH17J068592 Enhancer 0.3 ENCODE 500.7 +1.7 1677 1.1 HLF LINC01482 FAM20A
GH17J068593 Enhancer 0.2 ENCODE 500.7 +1.1 1059 0.2 LINC01482 FAM20A
GH17J068598 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE 9.3 +8.8 8829 6.9 NCOR1 CTCF ZIC2 ZBTB10 ZBTB26 ZBTB25 TGIF2 ZBTB7A TEAD1 TBX3 FAM20A LINC01482
GH17J068454 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.7 -132.5 -132484 10.4 HNRNPK FOXK2 ZBTB40 ZNF217 CTCF TCF12 SIN3A NRF1 POLR2G USF1 WIPI1 lnc-ARSG-3 NOL11 PRKAR1A MIR635 ABCA10 LINC01482 SLC16A6 ENSG00000267009 lnc-ARSG-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01482 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01482 Gene

Genomic Locations for LINC01482 Gene
chr17:68,591,796-68,763,882
(GRCh38/hg38)
Size:
172,087 bases
Orientation:
Plus strand
chr17:66,587,937-66,760,023
(GRCh37/hg19)
Size:
172,087 bases
Orientation:
Plus strand

Genomic View for LINC01482 Gene

Genes around LINC01482 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01482 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01482 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01482 Gene

Proteins for LINC01482 Gene

Post-translational modifications for LINC01482 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01482 Gene

Domains & Families for LINC01482 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01482 Gene

Function for LINC01482 Gene

Phenotypes From GWAS Catalog for LINC01482 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01482 Gene

Localization for LINC01482 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01482 Gene

Pathways & Interactions for LINC01482 Gene

PathCards logo

SuperPathways for LINC01482 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01482 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01482 Gene

Drugs & Compounds for LINC01482 Gene

No Compound Related Data Available

Transcripts for LINC01482 Gene

mRNA/cDNA for LINC01482 Gene

10 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
8 NONCODE transcripts :
10 LncBook transcripts :
8 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01482 Gene

No ASD Table

Relevant External Links for LINC01482 Gene

GeneLoc Exon Structure for
LINC01482

Expression for LINC01482 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01482 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01482

genes like me logo Genes that share expression patterns with LINC01482: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01482 Gene

Orthologs for LINC01482 Gene

Evolution for LINC01482 Gene

ENSEMBL:
Gene Tree for LINC01482 (if available)
TreeFam:
Gene Tree for LINC01482 (if available)

No data available for Orthologs for LINC01482 Gene

Paralogs for LINC01482 Gene

No data available for Paralogs for LINC01482 Gene

Variants for LINC01482 Gene

Additional dbSNP identifiers (rs#s) for LINC01482 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01482 Gene

Variant ID Type Subtype PubMed ID
esv2716149 CNV deletion 23290073
esv2716150 CNV deletion 23290073
esv3641115 CNV gain 21293372
esv3641116 CNV gain 21293372
nsv521300 CNV loss 19592680
nsv521432 CNV gain 19592680
nsv522322 CNV loss 19592680
nsv833524 CNV gain 17160897

Additional Variant Information for LINC01482 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01482

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01482 Gene

Disorders for LINC01482 Gene

Additional Disease Information for LINC01482

No disorders were found for LINC01482 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01482 Gene

Publications for LINC01482 Gene

  1. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. (PMID: 24324551) Deng X … REDSII Chagas Study Group from the NHLBI Retrovirus Epidemiology Donor Study-II Component International (PloS one 2013) 3 54

Products for LINC01482 Gene

Sources for LINC01482 Gene