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Aliases for LINC01481 Gene

Subcategory (RNA class) for LINC01481 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01481 Gene

  • Long Intergenic Non-Protein Coding RNA 1481 2 3 5

External Ids for LINC01481 Gene

Summaries for LINC01481 Gene

GeneCards Summary for LINC01481 Gene

LINC01481 (Long Intergenic Non-Protein Coding RNA 1481) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01481 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01481 Gene

Genomics for LINC01481 Gene

GeneHancer (GH) Regulatory Elements for LINC01481 Gene

Promoters and enhancers for LINC01481 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J070241 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 606.1 -0.3 -327 4.2 ZNF652 CC2D1A ZFX SIX5 ZNF148 NKRF POLR2A MLLT1 CEBPG GTF2F1 CNOT2 ENSG00000257815 LINC01481 KCNMB4 FRS2 LINC02821 ENSG00000279530
GH12J070048 Enhancer 1.2 Ensembl ENCODE 11 +191.7 191654 6.2 CC2D1A ELF3 CBFA2T2 CEBPG GTF2F1 BACH1 MAFK SP7 TRIM24 SP1 LINC01481 KCNMB4 ENSG00000257815 LINC02821 RAB3IP CNOT2 LOC100125409 ENSG00000257241
GH12J070365 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 5.3 -123.4 -123441 4 NKRF ZSCAN21 AHR MAFK NCOA6 SP7 PRDM1 MZF1 GLIS2 GMEB1 KCNMB4 LINC01481 GC12P070431
GH12J070196 Enhancer 0.7 Ensembl ENCODE 13 +46.6 46559 2.4 CEBPB POLR2A ZNF335 MAFK LINC02821 LINC01481 ENSG00000257815 GC12P070207
GH12J070353 Enhancer 1.1 UCNEbase Ensembl ENCODE 5.8 -111.3 -111341 3.4 MAFK CEBPG ZNF316 MAFG CEBPB EMSY KCNMB4 LINC01481 ENSG00000257815 ENSG00000279530 CNOT2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01481 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01481 Gene

Genomic Locations for LINC01481 Gene
chr12:70,222,190-70,243,360
(GRCh38/hg38)
Size:
21,171 bases
Orientation:
Minus strand
chr12:70,612,912-70,615,642
(GRCh37/hg19)
Size:
2,731 bases
Orientation:
Minus strand

Genomic View for LINC01481 Gene

Genes around LINC01481 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01481 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01481 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01481 Gene

Proteins for LINC01481 Gene

Post-translational modifications for LINC01481 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01481 Gene

Domains & Families for LINC01481 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01481 Gene

Function for LINC01481 Gene

Phenotypes From GWAS Catalog for LINC01481 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01481 Gene

Localization for LINC01481 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01481 Gene

Pathways & Interactions for LINC01481 Gene

PathCards logo

SuperPathways for LINC01481 Gene

No Data Available

Interacting Proteins for LINC01481 Gene

Gene Ontology (GO) - Biological Process for LINC01481 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01481 Gene

Drugs & Compounds for LINC01481 Gene

No Compound Related Data Available

Transcripts for LINC01481 Gene

mRNA/cDNA for LINC01481 Gene

(7) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01481 Gene

No ASD Table

Relevant External Links for LINC01481 Gene

GeneLoc Exon Structure for
LINC01481
ECgene alternative splicing isoforms for
LINC01481

Expression for LINC01481 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01481 Gene:

LINC01481
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01481 Gene

Orthologs for LINC01481 Gene

Evolution for LINC01481 Gene

ENSEMBL:
Gene Tree for LINC01481 (if available)
TreeFam:
Gene Tree for LINC01481 (if available)

No data available for Orthologs for LINC01481 Gene

Paralogs for LINC01481 Gene

No data available for Paralogs for LINC01481 Gene

Variants for LINC01481 Gene

Sequence variations from dbSNP and Humsavar for LINC01481 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000291588 -- 70,239,628(-) A/G genic_downstream_transcript_variant, intron_variant
rs1000348635 -- 70,239,400(-) A/G genic_downstream_transcript_variant, intron_variant
rs1000480443 -- 70,238,595(-) T/C genic_downstream_transcript_variant, intron_variant
rs1000511154 -- 70,230,340(-) TGGGGCATAATCAT/T genic_downstream_transcript_variant, intron_variant
rs1000622788 -- 70,240,833(-) G/A genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01481 Gene

Variant ID Type Subtype PubMed ID
esv3629882 CNV loss 21293372
esv3629883 CNV loss 21293372
esv3629884 CNV gain 21293372
nsv559237 CNV loss 21841781
nsv763 CNV deletion 18451855

Additional Variant Information for LINC01481 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01481

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01481 Gene

Disorders for LINC01481 Gene

Additional Disease Information for LINC01481

No disorders were found for LINC01481 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01481 Gene

Publications for LINC01481 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LINC01481 Gene

Sources for LINC01481 Gene

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