Aliases for LINC01480 Gene

Subcategory (RNA class) for LINC01480 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01480 Gene

  • Long Intergenic Non-Protein Coding RNA 1480 2 3 5
  • LINC01480 2 168
  • HSALNG0126205 167
  • NONHSAG025869 92

External Ids for LINC01480 Gene

Additional External Ids for LINC01480 Gene

Summaries for LINC01480 Gene

GeneCards Summary for LINC01480 Gene

LINC01480 (Long Intergenic Non-Protein Coding RNA 1480) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01480 include Breast Sarcoma.

Additional gene information for LINC01480 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01480 Gene

Genomics for LINC01480 Gene

GeneHancer (GH) Regulatory Elements for LINC01480 Gene

Promoters and enhancers for LINC01480 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J041534 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 500.7 +0.3 298 0.8 EP300 RELA MEF2C POLR2A SRF ARNT MEF2B NBN IRF4 POU2F2 LINC01480 ENSG00000268027
GH19J041533 Enhancer 0.4 dbSUPER 508.2 -1.5 -1543 0.8 HNRNPK RFX1 SCRT2 LINC01480 ENSG00000268355
GH19J041529 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -3.7 -3737 2.9 ZNF217 SP1 POLR2A MEF2C CTBP1 ATF2 NR2F2 CREB1 SP2 ZBTB17 ENSG00000268355 PCAT19 ZNF574 DMAC2 ERICH4 CIC LINC01480 NUMBL TGFB1 ARHGEF1
GH19J041516 Enhancer 0.6 dbSUPER 28.8 -18.6 -18593 2.5 CTCF RAD21 CEBPG EZH2 IKZF1 CEBPB SPI1 IKZF2 PKNOX1 SOX13 HSALNG0126204 LINC01480 PCAT19 CEACAM21 DMAC2 ERICH4 EXOSC5 BCKDHA PLEKHA3P1
GH19J041545 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 7.9 +16.4 16441 12.7 SP1 POLR2A RCOR1 CTBP1 RELA NR2F2 TCF12 ZNF316 SP2 ZBTB17 ENSG00000280014 lnc-CEACAM4-5 CEACAMP3 CEACAM21 EXOSC5 DMAC2 ERICH4 BCKDHA LINC01480 ENSG00000268355
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01480 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01480 Gene

Genomic Locations for LINC01480 Gene
chr19:41,535,183-41,536,904
(GRCh38/hg38)
Size:
1,722 bases
Orientation:
Plus strand
chr19:42,041,545-42,043,266
(GRCh37/hg19)
Size:
1,722 bases
Orientation:
Plus strand

Genomic View for LINC01480 Gene

Genes around LINC01480 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01480 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01480 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01480 Gene

Proteins for LINC01480 Gene

Post-translational modifications for LINC01480 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01480 Gene

Domains & Families for LINC01480 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01480 Gene

Function for LINC01480 Gene

Phenotypes From GWAS Catalog for LINC01480 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01480 Gene

Localization for LINC01480 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01480 Gene

Pathways & Interactions for LINC01480 Gene

PathCards logo

SuperPathways for LINC01480 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01480 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01480 Gene

Drugs & Compounds for LINC01480 Gene

No Compound Related Data Available

Transcripts for LINC01480 Gene

mRNA/cDNA for LINC01480 Gene

14 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
13 LncBook transcripts :
16 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01480 Gene

No ASD Table

Relevant External Links for LINC01480 Gene

GeneLoc Exon Structure for
LINC01480

Expression for LINC01480 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01480 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01480

genes like me logo Genes that share expression patterns with LINC01480: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01480 Gene

Orthologs for LINC01480 Gene

Evolution for LINC01480 Gene

ENSEMBL:
Gene Tree for LINC01480 (if available)
TreeFam:
Gene Tree for LINC01480 (if available)

No data available for Orthologs for LINC01480 Gene

Paralogs for LINC01480 Gene

No data available for Paralogs for LINC01480 Gene

Variants for LINC01480 Gene

Additional dbSNP identifiers (rs#s) for LINC01480 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01480 Gene

Variant ID Type Subtype PubMed ID
nsv1055515 CNV loss 25217958
nsv2493 CNV insertion 18451855
nsv510767 CNV deletion 20534489
nsv579602 CNV loss 21841781

Additional Variant Information for LINC01480 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01480

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01480 Gene

Disorders for LINC01480 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01480 Gene - From: DISEASES

Disorder Aliases PubMed IDs
breast sarcoma
  • sarcoma of breast
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01480

genes like me logo Genes that share disorders with LINC01480: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01480 Gene

Publications for LINC01480 Gene

No publications were found for LINC01480 Gene.

Products for LINC01480 Gene

Sources for LINC01480 Gene