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Aliases for LINC01480 Gene

Subcategory (RNA class) for LINC01480 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01480 Gene

  • Long Intergenic Non-Protein Coding RNA 1480 2 3 5

External Ids for LINC01480 Gene

Summaries for LINC01480 Gene

GeneCards Summary for LINC01480 Gene

LINC01480 (Long Intergenic Non-Protein Coding RNA 1480) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01480 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01480 Gene

Genomics for LINC01480 Gene

GeneHancer (GH) Regulatory Elements for LINC01480 Gene

Promoters and enhancers for LINC01480 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I041534 Enhancer 1.1 Ensembl ENCODE dbSUPER 550.8 +0.2 156 1.1 EBF1 BMI1 BATF IRF4 RELA POLR2A NFATC1 ATF7 ETV6 BCLAF1 LINC01480 GC19M041536
GH19I041533 Enhancer 0.4 dbSUPER 558.3 -1.5 -1543 0.8 RFX1 SCRT2 LINC01480 ENSG00000268355
GH19I041529 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -3.7 -3737 2.9 PKNOX1 ATF1 GLIS2 ATF7 RUNX3 SP3 JUNB ZNF518A CBX8 GLIS1 ENSG00000268355 PCAT19 ZNF574 DMAC2 ERICH4 CIC LINC01480 NUMBL TGFB1 ARHGEF1
GH19I041547 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 7.6 +17.5 17544 10.5 HDGF HDAC1 PKNOX1 SMAD1 ZBTB7B ZNF335 SCRT2 ETV6 IKZF2 RUNX3 CEACAM21 ENSG00000280014 CEACAMP3 DMAC2 ERICH4 BCKDHA EXOSC5 LINC01480 ENSG00000268355 TMEM91
GH19I041521 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 7.9 -13.1 -13132 1.7 PKNOX1 SUZ12 BACH1 ZNF335 POLR2A IKZF2 RUNX3 EZH2 ZNF687 ZNF280D PLEKHA3P1 CEACAM21 DMAC2 ERICH4 BCKDHA EXOSC5 LINC01480 PCAT19 ENSG00000268355
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01480 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01480 Gene

Genomic Locations for LINC01480 Gene
chr19:41,535,183-41,536,904
(GRCh38/hg38)
Size:
1,722 bases
Orientation:
Plus strand
chr19:42,041,545-42,043,266
(GRCh37/hg19)

Genomic View for LINC01480 Gene

Genes around LINC01480 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01480 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01480 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01480 Gene

Proteins for LINC01480 Gene

Post-translational modifications for LINC01480 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01480 Gene

Domains & Families for LINC01480 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01480 Gene

Function for LINC01480 Gene

Phenotypes From GWAS Catalog for LINC01480 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01480 Gene

Localization for LINC01480 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01480 Gene

Pathways & Interactions for LINC01480 Gene

SuperPathways for LINC01480 Gene

No Data Available

Interacting Proteins for LINC01480 Gene

Gene Ontology (GO) - Biological Process for LINC01480 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01480 Gene

Drugs & Compounds for LINC01480 Gene

No Compound Related Data Available

Transcripts for LINC01480 Gene

mRNA/cDNA for LINC01480 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01480 Gene

No ASD Table

Relevant External Links for LINC01480 Gene

GeneLoc Exon Structure for
LINC01480
ECgene alternative splicing isoforms for
LINC01480

Expression for LINC01480 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01480 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01480 Gene:

LINC01480
genes like me logo Genes that share expression patterns with LINC01480: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01480 Gene

Orthologs for LINC01480 Gene

Evolution for LINC01480 Gene

ENSEMBL:
Gene Tree for LINC01480 (if available)
TreeFam:
Gene Tree for LINC01480 (if available)

No data available for Orthologs for LINC01480 Gene

Paralogs for LINC01480 Gene

No data available for Paralogs for LINC01480 Gene

Variants for LINC01480 Gene

Sequence variations from dbSNP and Humsavar for LINC01480 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1001563624 -- 41,534,919(+) T/C upstream_transcript_variant
rs1001845485 -- 41,536,428(+) G/T intron_variant
rs1001929574 -- 41,535,114(+) G/A upstream_transcript_variant
rs1003127473 -- 41,537,282(+) G/C downstream_transcript_variant
rs1003346475 -- 41,536,383(+) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01480 Gene

Variant ID Type Subtype PubMed ID
nsv1055515 CNV loss 25217958
nsv2493 CNV insertion 18451855
nsv510767 CNV deletion 20534489
nsv579602 CNV loss 21841781

Additional Variant Information for LINC01480 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01480

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01480 Gene

Disorders for LINC01480 Gene

Additional Disease Information for LINC01480

No disorders were found for LINC01480 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01480 Gene

Publications for LINC01480 Gene

No publications were found for LINC01480 Gene.

Products for LINC01480 Gene

Sources for LINC01480 Gene

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