Aliases for LINC01479 Gene

Subcategory (RNA class) for LINC01479 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01479 Gene

  • Long Intergenic Non-Protein Coding RNA 1479 2 3 5
  • LINC01479 2 5 165
  • Heart Tissue-Associated Transcript 39 3
  • NONHSAG011597.2 91
  • HSALNG0092135 164
  • HRAT39 3

External Ids for LINC01479 Gene

Summaries for LINC01479 Gene

GeneCards Summary for LINC01479 Gene

LINC01479 (Long Intergenic Non-Protein Coding RNA 1479) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01479 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01479 Gene

Genomics for LINC01479 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01479 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J067928 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE dbSUPER 610.8 0.0 -23 1.1 POLR2A CTCF KLF4 FOXA1 RAD21 LINC01479 HSALNG0092135 LOC107984526 IFNG DYRK2
GH12J067988 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.5 +61.7 61680 5 SP1 FOXA1 RELA TCF12 IKZF2 POLR2A PKNOX1 EED ARID3A RELB IFNG-AS1 LINC01479 IFNG IL22 DYRK2 RPL39P28 LOC107984526
GH12J067646 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 5.8 -279.3 -279336 5.8 CTCF PRDM10 RFX1 IKZF1 ZNF692 POLR2A BACH1 TARDBP FOXA1 LARP7 DYRK2 CAND1 LINC01479 ENSG00000235872 IFNG
GH12J067939 Enhancer 1 Ensembl ENCODE dbSUPER 9.3 +12.4 12389 4.6 CTCF POLR2A REST RAD21 TRIM22 GABPA ZNF561 CEBPB ARID3A SP1 IFNG-AS1 ENSG00000235872 LINC01479 piR-61532-071 LOC107984526 IFNG DYRK2
GH12J067697 Enhancer 0.8 ENCODE 7.3 -230.5 -230535 2 SP1 BACH1 STAT3 RELA TCF12 IKZF2 RCOR1 TRIM22 EED SIN3A ENSG00000235872 LINC01479 lnc-IFNG-2 lnc-DYRK2-6 DYRK2 IFNG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01479 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01479 Gene

Genomic Locations for LINC01479 Gene
chr12:67,929,235-67,971,120
(GRCh38/hg38)
Size:
41,886 bases
Orientation:
Plus strand
chr12:68,323,015-68,363,797
(GRCh37/hg19)
Size:
40,783 bases
Orientation:
Plus strand

Genomic View for LINC01479 Gene

Genes around LINC01479 on UCSC Golden Path with GeneCards custom track
LINC01479 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01479 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01479 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01479 Gene

Proteins for LINC01479 Gene

Post-translational modifications for LINC01479 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01479 Gene

Domains & Families for LINC01479 Gene

Gene Families for LINC01479 Gene

genes like me logo Genes that share domains with LINC01479: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01479 Gene

Function for LINC01479 Gene

Phenotypes From GWAS Catalog for LINC01479 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01479 Gene

Localization for LINC01479 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01479 Gene

Pathways & Interactions for LINC01479 Gene

PathCards logo

SuperPathways for LINC01479 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01479 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01479 Gene

Drugs & Compounds for LINC01479 Gene

No Compound Related Data Available

Transcripts for LINC01479 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01479 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004416CC_9606 lncRNA 509 4

Ensembl: ENST00000545520 (view in UCSC) ,

LncBook: HSALNT0190893,

LNCipedia: LINC01479:1,

NONCODE: NONHSAT029269.2,

URS00005C7312_9606 lncRNA 444 4

Ensembl: ENST00000546170 (view in UCSC) ,

LncBook: HSALNT0190896,

LNCipedia: LINC01479:3,

NONCODE: NONHSAT029270.2,

URS000075DA35_9606 lncRNA 472 2

HGNC: 51123,

RefSeq: NR_120456,

URS00008BD195_9606 lncRNA 2409 3

LncBook: HSALNT0190904,

LNCipedia: LINC01479:8,

NONCODE: NONHSAT029274.2,

URS00008B5F84_9606 lncRNA 868 3

LncBook: HSALNT0190897,

LNCipedia: LINC01479:4,

NONCODE: NONHSAT029271.2,

LINC01479 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01479 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01479 Gene

No ASD Table

Relevant External Links for LINC01479 Gene

GeneLoc Exon Structure for
LINC01479

Expression for LINC01479 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01479 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01479

genes like me logo Genes that share expression patterns with LINC01479: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01479 Gene

Orthologs for LINC01479 Gene

Evolution for LINC01479 Gene

ENSEMBL:
Gene Tree for LINC01479 (if available)
TreeFam:
Gene Tree for LINC01479 (if available)

No data available for Orthologs for LINC01479 Gene

Paralogs for LINC01479 Gene

No data available for Paralogs for LINC01479 Gene

Variants for LINC01479 Gene

Additional dbSNP identifiers (rs#s) for LINC01479 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01479 Gene

Variant ID Type Subtype PubMed ID
nsv1039638 CNV gain 25217958

Additional Variant Information for LINC01479 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01479

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01479 Gene

Disorders for LINC01479 Gene

Additional Disease Information for LINC01479

No disorders were found for LINC01479 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01479 Gene

Publications for LINC01479 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3

No data available for Mastermind for LINC01479 Gene

Products for LINC01479 Gene

Sources for LINC01479 Gene