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Aliases for LINC01479 Gene

Subcategory (RNA class) for LINC01479 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01479 Gene

  • Long Intergenic Non-Protein Coding RNA 1479 2 3 5
  • Heart Tissue-Associated Transcript 39 3
  • HRAT39 3

External Ids for LINC01479 Gene

Summaries for LINC01479 Gene

GeneCards Summary for LINC01479 Gene

LINC01479 (Long Intergenic Non-Protein Coding RNA 1479) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01479 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01479 Gene

Genomics for LINC01479 Gene

GeneHancer (GH) Regulatory Elements for LINC01479 Gene

Promoters and enhancers for LINC01479 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J067928 Enhancer 0.7 ENCODE dbSUPER 660.9 0.0 -23 1.1 CTCF GATA3 POLR2A KLF4 FOXA1 LINC01479 ENSG00000279505
GH12J067988 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.5 +61.6 61594 4.8 PKNOX1 FOXA2 EBF1 BATF RELA GATA3 POLR2A EED ATF7 IKZF2 IFNG-AS1 LINC01479 IFNG IL22 DYRK2 GC12P067986 RPL39P28
GH12J067646 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 5.8 -279.7 -279681 5.1 PKNOX1 FOXA2 ARID4B SIN3A DMAP1 ZNF48 ZNF121 POLR2B GLIS2 ZNF207 DYRK2 CAND1 LINC01479 GC12P067661
GH12J067939 Enhancer 1 Ensembl ENCODE dbSUPER 9.2 +12.4 12389 4.6 CTCF ZNF654 USF1 TRIM22 REST ZNF2 RAD21 GABPA RFX5 SP1 IFNG-AS1 ENSG00000235872 LINC01479 GC12P067957
GH12J067697 Enhancer 1 Ensembl ENCODE 7.3 -230.5 -230493 2.1 STAT5A BMI1 BATF IRF4 ZBTB40 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 ENSG00000235872 LINC01479 LOC105369816 LINC02421
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01479 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01479 Gene

Genomic Locations for LINC01479 Gene
chr12:67,929,235-67,970,017
(GRCh38/hg38)
Size:
40,783 bases
Orientation:
Plus strand
chr12:68,323,015-68,363,797
(GRCh37/hg19)
Size:
40,783 bases
Orientation:
Plus strand

Genomic View for LINC01479 Gene

Genes around LINC01479 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01479 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01479 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01479 Gene

Proteins for LINC01479 Gene

Post-translational modifications for LINC01479 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01479 Gene

Domains & Families for LINC01479 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01479 Gene

Function for LINC01479 Gene

Phenotypes From GWAS Catalog for LINC01479 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01479 Gene

Localization for LINC01479 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01479 Gene

Pathways & Interactions for LINC01479 Gene

SuperPathways for LINC01479 Gene

No Data Available

Interacting Proteins for LINC01479 Gene

Gene Ontology (GO) - Biological Process for LINC01479 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01479 Gene

Drugs & Compounds for LINC01479 Gene

No Compound Related Data Available

Transcripts for LINC01479 Gene

mRNA/cDNA for LINC01479 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01479 Gene

No ASD Table

Relevant External Links for LINC01479 Gene

GeneLoc Exon Structure for
LINC01479
ECgene alternative splicing isoforms for
LINC01479

Expression for LINC01479 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01479 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01479 Gene:

LINC01479
genes like me logo Genes that share expression patterns with LINC01479: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01479 Gene

Orthologs for LINC01479 Gene

Evolution for LINC01479 Gene

ENSEMBL:
Gene Tree for LINC01479 (if available)
TreeFam:
Gene Tree for LINC01479 (if available)

No data available for Orthologs for LINC01479 Gene

Paralogs for LINC01479 Gene

No data available for Paralogs for LINC01479 Gene

Variants for LINC01479 Gene

Sequence variations from dbSNP and Humsavar for LINC01479 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000052706 -- 67,931,069(+) G/A intron_variant
rs1000093806 -- 67,930,105(+) G/T intron_variant
rs1000138987 -- 67,960,113(+) A/G intron_variant
rs1000166272 -- 67,937,752(+) G/T intron_variant
rs1000225562 -- 67,958,521(+) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01479 Gene

Variant ID Type Subtype PubMed ID
nsv1039638 CNV gain 25217958

Additional Variant Information for LINC01479 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01479

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01479 Gene

Disorders for LINC01479 Gene

Additional Disease Information for LINC01479

No disorders were found for LINC01479 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01479 Gene

Publications for LINC01479 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 58

Products for LINC01479 Gene

Sources for LINC01479 Gene

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