Aliases for LINC01477 Gene

Data sources for LINC01477 Gene:

RNA type for LINC01477 Gene

lncRNA

Aliases for LINC01477 Gene

External Ids for LINC01477 Gene

Summaries for LINC01477 Gene

GeneCards Summary for LINC01477 Gene

LINC01477 (Long Intergenic Non-Protein Coding RNA 1477) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01477 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01477 Gene

Genomics for LINC01477 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01477 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J040066 Promoter 0.3 EPDnew 250.7 0.0 -3 0.1 ENSG00000279034 LINC01477 LOC105372081 lnc-CELF4-15 HSALNG0121096-002 HSALNG0121096-001
GH18J040041 Enhancer 0.3 Ensembl 0.4 -24.2 -24184 1 USF1 HSALNG0121096-002 LINC01477 lnc-CELF4-15 HSALNG0121096-001 LINC01902
GH18J040093 Enhancer 0.3 Ensembl 0.3 +27.8 27816 1.4 NANOG HSALNG0121096-003 lnc-CELF4-15 LINC01477 HSALNG0121096-001
GH18J040049 Enhancer 0.2 FANTOM5 0.4 -16.8 -16821 0.3 HSALNG0121096-002 LINC01477 lnc-CELF4-15 HSALNG0121096-001 LINC01902
GH18J040050 Enhancer 0.2 Ensembl 0.4 -16.4 -16384 0.2 HSALNG0121096-002 LINC01477 lnc-CELF4-15 HSALNG0121096-001 LINC01902
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01477 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01477 Gene

Latest Assembly
chr18:40,066,285-40,100,005
(GRCh38/hg38)
Size:
33,721 bases
Orientation:
Plus strand

Previous Assembly
chr18:37,646,250-37,679,197
(GRCh37/hg19 by Entrez Gene)
Size:
32,948 bases
Orientation:
Plus strand

chr18:37,646,250-37,679,197
(GRCh37/hg19 by Ensembl)
Size:
32,948 bases
Orientation:
Plus strand

Genomic View for LINC01477 Gene

Genes around LINC01477 on UCSC Golden Path with GeneCards custom track
LINC01477 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01477 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01477 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01477 Gene

Proteins for LINC01477 Gene

Post-translational modifications for LINC01477 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01477 Gene

Domains & Families for LINC01477 Gene

Gene Families for LINC01477 Gene

genes like me logo Genes that share domains with LINC01477: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01477 Gene

Function for LINC01477 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01477 Gene

Localization for LINC01477 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01477 Gene

Pathways & Interactions for LINC01477 Gene

PathCards logo

SuperPathways for LINC01477 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01477 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01477 Gene

Drugs & Compounds for LINC01477 Gene

No Compound Related Data Available

Transcripts for LINC01477 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01477 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000449858_9606 lncRNA 1230 4

Ensembl: ENST00000566101 (view in UCSC) ,

LncBook: HSALNT0250339,

LNCipedia: LINC01477:2,

NONCODE: NONHSAT059040.2,

URS000075AA8A_9606 lncRNA 1226 1

RefSeq: NR_110791,

URS00008BFC68_9606 lncRNA 1229 2

LncBook: HSALNT0250341,

LNCipedia: LINC01477:1,

URS00009AD5B6_9606 lncRNA 1225 2

LncBook: HSALNT0250340,

NONCODE: NONHSAT177714.1,

URS0001BCCF36_9606 lncRNA 2124 1

LncBook: HSALNT0250326,

LINC01477 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01477 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01477 Gene

No ASD Table

Relevant External Links for LINC01477 Gene

GeneLoc Exon Structure for
LINC01477

Expression for LINC01477 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01477 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01477

genes like me logo Genes that share expression patterns with LINC01477: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01477 Gene

Orthologs for LINC01477 Gene

Evolution for LINC01477 Gene

ENSEMBL:
Gene Tree for LINC01477 (if available)
TreeFam:
Gene Tree for LINC01477 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01477

No data available for Orthologs for LINC01477 Gene

Paralogs for LINC01477 Gene

No data available for Paralogs for LINC01477 Gene

Variants for LINC01477 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01477 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01477 Gene

Variant ID Type Subtype PubMed ID
esv2758723 CNV gain 17122850
nsv2263 CNV insertion 18451855

Additional Variant Information for LINC01477 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01477
Leiden Open Variation Database (LOVD)
LINC01477

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01477 Gene

Disorders for LINC01477 Gene

Additional Disease Information for LINC01477

No disorders were found for LINC01477 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01477 Gene

Publications for LINC01477 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01477 Gene

Sources for LINC01477 Gene