LINC01476 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1476

GC17M059430
GIFtS:
12
See more...

Aliases for LINC01476 Gene

Subcategory (RNA class) for LINC01476 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01476 Gene

  • Long Intergenic Non-Protein Coding RNA 1476 2 3 5
  • LINC01476 2 5 165
  • NONHSAG022355.2 91
  • HSALNG0117770 164

External Ids for LINC01476 Gene

Summaries for LINC01476 Gene

GeneCards Summary for LINC01476 Gene

LINC01476 (Long Intergenic Non-Protein Coding RNA 1476) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01476 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01476 Gene

Genomics for LINC01476 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01476 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J059528 Promoter 0.5 EPDnew 600.7 +0.1 69 0.1 ZBTB17 YY2 LINC01476 YPEL2 RPS6KB1 TUBD1 RF00017-2474 DHX40
GH17J059527 Enhancer 0.5 Ensembl 600.7 +0.3 345 0.4 SCRT2 ZBTB17 YY2 IKZF1 HLF LINC01476 YPEL2 RPS6KB1 TUBD1 RF00017-2474 DHX40
GH17J059521 Enhancer 1.1 Ensembl ENCODE 0.4 +6.8 6810 4.3 CEBPG GATAD2A CTCF JUND ZNF143 PKNOX1 RXRB REST RAD21 SP1 DHX40 ENSG00000224738 RPS6KB1 YPEL2 NDUFB8P2 TUBD1 PTRH2 VMP1 LINC01476 RF00017-2474
GH17J059513 Enhancer 1.1 Ensembl ENCODE 0.4 +11.9 11946 5.6 CEBPG GATAD2A TFE3 SOX13 ZNF692 RCOR2 RXRB PATZ1 IRF2 SP1 DHX40 YPEL2 SMG8 ENSG00000275860 RNFT1-DT RF00017-2474 LINC01476
GH17J059506 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.4 +18.9 18945 3.2 JUND ZNF766 E2F5 ZNF316 MEF2D MAFK FOSL1 MAFG RELA ZNF644 YPEL2 SMG8 DHX40 RNFT1-DT RNFT1 RF00017-2474 LOC105371845 LINC01476
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01476 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01476 Gene

Genomic Locations for LINC01476 Gene
chr17:59,422,088-59,526,946
(GRCh38/hg38)
Size:
104,859 bases
Orientation:
Minus strand
chr17:57,508,230-57,604,307
(GRCh37/hg19)
Size:
96,078 bases
Orientation:
Minus strand

Genomic View for LINC01476 Gene

Genes around LINC01476 on UCSC Golden Path with GeneCards custom track
LINC01476 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01476 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01476 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01476 Gene

Proteins for LINC01476 Gene

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  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01476 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01476 Gene

Domains & Families for LINC01476 Gene

Gene Families for LINC01476 Gene

HGNC:
genes like me logo Genes that share domains with LINC01476: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01476 Gene

Function for LINC01476 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01476 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01476 Gene

Localization for LINC01476 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01476 Gene

Pathways & Interactions for LINC01476 Gene

PathCards logo

SuperPathways for LINC01476 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01476 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01476 Gene

Drugs & Compounds for LINC01476 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LINC01476 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01476 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E0FB_9606 lncRNA 546 4

HGNC: 51117,

RefSeq: NR_110813,

LncBook: HSALNT0243259,

LNCipedia: LINC01476:2,

URS0000EF6B5E_9606 lncRNA 4151 1

Ensembl: ENST00000665301 (view in UCSC) ,

URS0000EF55F9_9606 lncRNA 2498 1

Ensembl: ENST00000665757 (view in UCSC) ,

URS0000EF4DD1_9606 lncRNA 2361 1

Ensembl: ENST00000584262 (view in UCSC) ,

URS0000EF0893_9606 lncRNA 2274 1

Ensembl: ENST00000670915 (view in UCSC) ,

LINC01476 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01476 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01476 Gene

No ASD Table

Relevant External Links for LINC01476 Gene

GeneLoc Exon Structure for
LINC01476

Expression for LINC01476 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01476 Gene

mRNA expression in normal human tissues for LINC01476 Gene
mRNA expression by GTEx for LINC01476 Gene
genes like me logo Genes that share expression patterns with LINC01476: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01476 Gene

Orthologs for LINC01476 Gene

Evolution for LINC01476 Gene

ENSEMBL:
Gene Tree for LINC01476 (if available)
TreeFam:
Gene Tree for LINC01476 (if available)

No data available for Orthologs for LINC01476 Gene

Paralogs for LINC01476 Gene

No data available for Paralogs for LINC01476 Gene

Variants for LINC01476 Gene

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  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC01476 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01476 Gene

Variant ID Type Subtype PubMed ID
esv3640906 CNV gain 21293372
nsv1057152 CNV gain 25217958
nsv1066630 CNV gain 25217958
nsv1067453 CNV gain 25217958
nsv833500 CNV loss 17160897

Additional Variant Information for LINC01476 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01476

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01476 Gene

Disorders for LINC01476 Gene

Additional Disease Information for LINC01476

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for LINC01476 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01476 Gene

Publications for LINC01476 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

ExternalLinks

View latest publications for LINC01476 gene in Mastermind

Products for LINC01476 Gene

Sources for LINC01476 Gene