Aliases for LINC01474 Gene

Subcategory (RNA class) for LINC01474 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01474 Gene

  • Long Intergenic Non-Protein Coding RNA 1474 2 3 5
  • LINC01474 2 168
  • NONHSAG052563 92
  • HSALNG0071876 167

External Ids for LINC01474 Gene

Previous GeneCards Identifiers for LINC01474 Gene

  • GC09M072863

Summaries for LINC01474 Gene

GeneCards Summary for LINC01474 Gene

LINC01474 (Long Intergenic Non-Protein Coding RNA 1474) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01474 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01474 Gene

Genomics for LINC01474 Gene

GeneHancer (GH) Regulatory Elements for LINC01474 Gene

Promoters and enhancers for LINC01474 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J072873 Enhancer 0.6 Ensembl 510.8 +1.7 1690 1.5 CTCF REST RAD21 SMC3 ZNF654 POLR2A GATA2 ZNF652 ARID2 CC2D1A LINC01474 lnc-TMC1-2
GH09J072857 Enhancer 1.1 Ensembl ENCODE 10.3 +16.2 16247 3.8 EP300 CTCF TCF12 POLR2G NCOR1 KDM6A MYC TGIF2 HINFP ZKSCAN8 ALDH1A1 LINC01474 TMC1 lnc-TMC1-2 piR-56022-565
GH09J072834 Enhancer 0.8 Ensembl 10.9 +39.4 39434 1 TCF12 NCOR1 KDM6A TCF7 TEAD1 ZSCAN9 FOXA2 CEBPB SAP130 ZNF205 LINC01474 piR-53431-690 piR-36393-521 TMC1
GH09J072538 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 5.9 +332.9 332902 4.9 TCF12 USF1 JUND HES1 MYC EP300 TAF9B RBM25 MIER1 HDAC3 ZFAND5 TMC1 LINC01474 piR-33804-151 lnc-ZFAND5-5 lnc-TMC1-1
GH09J072826 Enhancer 1 Ensembl ENCODE 8.9 +46.4 46376 3.2 TCF12 NCOR1 TCF7 FOXA1 EP300 TEAD1 TBX3 FOXA2 FOS SAP130 LINC01474 piR-53431-690 piR-36393-521 TMC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01474 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01474 Gene

Genomic Locations for LINC01474 Gene
chr9:72,871,130-72,874,135
(GRCh38/hg38)
Size:
3,006 bases
Orientation:
Minus strand
chr9:75,486,644-75,489,025
(GRCh37/hg19)
Size:
2,382 bases
Orientation:
Minus strand

Genomic View for LINC01474 Gene

Genes around LINC01474 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01474 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01474 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01474 Gene

Proteins for LINC01474 Gene

Post-translational modifications for LINC01474 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01474 Gene

Domains & Families for LINC01474 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01474 Gene

Function for LINC01474 Gene

Phenotypes From GWAS Catalog for LINC01474 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01474 Gene

Localization for LINC01474 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01474 Gene

Pathways & Interactions for LINC01474 Gene

PathCards logo

SuperPathways for LINC01474 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01474 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01474 Gene

Drugs & Compounds for LINC01474 Gene

No Compound Related Data Available

Transcripts for LINC01474 Gene

mRNA/cDNA for LINC01474 Gene

17 RNACentral transcripts :
3 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
1 LncBook transcripts :
8 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01474 Gene

No ASD Table

Relevant External Links for LINC01474 Gene

GeneLoc Exon Structure for
LINC01474

Expression for LINC01474 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01474 Gene

genes like me logo Genes that share expression patterns with LINC01474: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01474 Gene

Orthologs for LINC01474 Gene

Evolution for LINC01474 Gene

ENSEMBL:
Gene Tree for LINC01474 (if available)
TreeFam:
Gene Tree for LINC01474 (if available)

No data available for Orthologs for LINC01474 Gene

Paralogs for LINC01474 Gene

No data available for Paralogs for LINC01474 Gene

Variants for LINC01474 Gene

Additional dbSNP identifiers (rs#s) for LINC01474 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01474 Gene

Variant ID Type Subtype PubMed ID
nsv6560 CNV deletion 18451855

Additional Variant Information for LINC01474 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01474

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01474 Gene

Disorders for LINC01474 Gene

Additional Disease Information for LINC01474

No disorders were found for LINC01474 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01474 Gene

Publications for LINC01474 Gene

No publications were found for LINC01474 Gene.

Products for LINC01474 Gene

Sources for LINC01474 Gene