Aliases for LINC01465 Gene

RNA type for LINC01465 Gene

lncRNA

Aliases for LINC01465 Gene

External Ids for LINC01465 Gene

Previous HGNC Symbols for LINC01465 Gene

  • C12orf61

Summaries for LINC01465 Gene

GeneCards Summary for LINC01465 Gene

LINC01465 (Long Intergenic Non-Protein Coding RNA 1465) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01465 Gene

Genomics for LINC01465 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01465 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01465 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01465 Gene

Latest Assembly
chr12:62,601,750-62,603,690
(GRCh38/hg38)
Size:
1,941 bases
Orientation:
Minus strand

Previous Assembly
chr12:62,995,531-62,997,214
(GRCh37/hg19 by Entrez Gene)
Size:
1,684 bases
Orientation:
Minus strand

chr12:62,995,531-62,997,214
(GRCh37/hg19 by Ensembl)
Size:
1,684 bases
Orientation:
Minus strand

Genomic View for LINC01465 Gene

Genes around LINC01465 on UCSC Golden Path with GeneCards custom track
LINC01465 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01465 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01465 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01465 Gene

Proteins for LINC01465 Gene

  • Protein details for LINC01465 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7H1-CL061_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01465
    Protein Accession:
    Q8N7H1
    Secondary Accessions:
    • B2RMN9
    • Q3ZCV4

    Protein attributes for LINC01465 Gene

    Size:
    131 amino acids
    Molecular mass:
    13435 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01465 Gene

Post-translational modifications for LINC01465 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01465 Gene

Domains & Families for LINC01465 Gene

Gene Families for LINC01465 Gene

genes like me logo Genes that share domains with LINC01465: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01465 Gene

Function for LINC01465 Gene

Phenotypes From GWAS Catalog for LINC01465 Gene

genes like me logo Genes that share phenotypes with LINC01465: view

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01465

Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01465 Gene

Localization for LINC01465 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01465 Gene

Pathways & Interactions for LINC01465 Gene

PathCards logo

SuperPathways for LINC01465 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01465 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01465 Gene

Drugs & Compounds for LINC01465 Gene

No Compound Related Data Available

Transcripts for LINC01465 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01465 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00007E137B_9606 lncRNA 1940 2

Ensembl: ENST00000408887 (view in UCSC) ,

LNCipedia: LINC01465:1,

URS000075A110_9606 lncRNA 1684 1

RefSeq: NR_121682,

URS0000D5763E_9606 lncRNA 1684 1

LNCipedia: LINC01465:2,

URS0000AA1244_9606 lncRNA 781 1

LNCipedia: LINC01465:3,

LINC01465 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01465 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01465

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01465 Gene

No ASD Table

Relevant External Links for LINC01465 Gene

GeneLoc Exon Structure for
LINC01465

Expression for LINC01465 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01465 Gene

Protein differential expression in normal tissues from HIPED for LINC01465 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LINC01465 Gene



Protein tissue co-expression partners for LINC01465 Gene

- Elite partner

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01465

genes like me logo Genes that share expression patterns with LINC01465: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01465 Gene

Orthologs for LINC01465 Gene

Evolution for LINC01465 Gene

ENSEMBL:
Gene Tree for LINC01465 (if available)
TreeFam:
Gene Tree for LINC01465 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01465

No data available for Orthologs for LINC01465 Gene

Paralogs for LINC01465 Gene

No data available for Paralogs for LINC01465 Gene

Variants for LINC01465 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01465 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01465 Gene

Variant ID Type Subtype PubMed ID
nsv740 CNV insertion 18451855
nsv821671 CNV loss 15273396

Variation tolerance for LINC01465 Gene

Gene Damage Index Score: 1.00; 20.49% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC01465 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01465
Leiden Open Variation Database (LOVD)
LINC01465

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC01465 Gene

Disorders for LINC01465 Gene

Additional Disease Information for LINC01465

No disorders were found for LINC01465 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01465 Gene

Publications for LINC01465 Gene

  1. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3
  2. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer SE … Baylor College of Medicine Human Genome Sequencing Center Sequence Production Team (Nature 2006) 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01465 Gene

Sources for LINC01465 Gene