Aliases for LINC01461 Gene

Subcategory (RNA class) for LINC01461 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01461 Gene

  • Long Intergenic Non-Protein Coding RNA 1461 2 3
  • TCONS_00001552 2 3
  • NONHSAG001955.2 91
  • HSALNG0004816 164
  • Lnc-CTBS-4 165
  • LINC01461 2

External Ids for LINC01461 Gene

Previous GeneCards Identifiers for LINC01461 Gene

  • GC01U904230

Summaries for LINC01461 Gene

GeneCards Summary for LINC01461 Gene

LINC01461 (Long Intergenic Non-Protein Coding RNA 1461) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01461 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01461 Gene

Genomics for LINC01461 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01461 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J084618 Promoter/Enhancer 1.5 ENCODE CraniofacialAtlas dbSUPER 600.7 +0.8 848 2.9 CTCF PRDM10 ZNF629 RFX1 KDM1A ZNF692 LARP7 ZNF143 ZIC2 ZSCAN4 LINC01461 ENSG00000271576 SPATA1 CTBS GNG5 RPF1 MCOLN3 ENSG00000285374 SSX2IP
GH01J084630 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -12.5 -12463 5.9 CREB1 ZNF629 IKZF1 ZNF692 TARDBP JUND PKNOX1 PATZ1 DPF2 ZNF600 LINC01555 SPATA1 GNG5 RPF1 CTBS ENSG00000232622 LOC107985104 lnc-SSX2IP-3 LINC01461 SSX2IP
GH01J084601 Enhancer 0.9 ENCODE 0.4 +17.4 17385 3.5 CTCF TEAD4 PRDM10 REST RFX1 IKZF1 ZNF692 PRDM1 ZNF143 RXRB CTBS SPATA1 RPF1 ENSG00000285374 LINC01461 lnc-CTBS-1 SSX2IP
GH01J084597 Enhancer 0.9 Ensembl ENCODE 0.4 +21.4 21433 3.6 ZNF629 JUND RELA IKZF2 ZNF600 SCRT2 EED DPF2 RUNX3 ASH2L SPATA1 CTBS GNG5 RPF1 ENSG00000285374 lnc-CTBS-1 LINC01461 SSX2IP
GH01J084611 Enhancer 0.3 Ensembl ENCODE 0.4 +9.1 9134 1.4 SPATA1 CTBS RPF1 GNG5 ENSG00000285374 LINC01461 SSX2IP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01461 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01461 Gene

Genomic Locations for LINC01461 Gene
chr1:84,596,236-84,621,034
(GRCh38/hg38)
Size:
24,799 bases
Orientation:
Minus strand

Genomic View for LINC01461 Gene

Genes around LINC01461 on UCSC Golden Path with GeneCards custom track
LINC01461 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01461 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01461 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01461 Gene

Proteins for LINC01461 Gene

Post-translational modifications for LINC01461 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01461 Gene

Domains & Families for LINC01461 Gene

Gene Families for LINC01461 Gene

genes like me logo Genes that share domains with LINC01461: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01461 Gene

Function for LINC01461 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01461 Gene

Localization for LINC01461 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01461 Gene

Pathways & Interactions for LINC01461 Gene

PathCards logo

SuperPathways for LINC01461 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01461 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01461 Gene

Drugs & Compounds for LINC01461 Gene

No Compound Related Data Available

Transcripts for LINC01461 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01461 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E3FA3_9606 lncRNA 560 5

HGNC: 50859,

RefSeq: NR_125761,

LncBook: HSALNT0009745,

LNCipedia: lnc-CTBS-4:6,

NONCODE: NONHSAT151843.1,

URS00008B8447_9606 lncRNA 436 3

LncBook: HSALNT0009754,

LNCipedia: lnc-CTBS-4:12,

NONCODE: NONHSAT004225.2,

URS00008B63DF_9606 lncRNA 356 3

LncBook: HSALNT0009742,

LNCipedia: lnc-CTBS-4:10,

NONCODE: NONHSAT004220.2,

URS00009AFDB9_9606 lncRNA 1255 2

LncBook: HSALNT0009746,

NONCODE: NONHSAT151844.1,

URS00009C0C7A_9606 lncRNA 979 2

LNCipedia: lnc-CTBS-4:7,

NONCODE: NONHSAT004222.2,

LINC01461 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01461 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01461 Gene

No ASD Table

Relevant External Links for LINC01461 Gene

GeneLoc Exon Structure for
LINC01461

Expression for LINC01461 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01461 Gene

Orthologs for LINC01461 Gene

No data available for Orthologs and Evolution for LINC01461 Gene

Paralogs for LINC01461 Gene

No data available for Paralogs for LINC01461 Gene

Variants for LINC01461 Gene

Additional dbSNP identifiers (rs#s) for LINC01461 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01461 Gene

Variant ID Type Subtype PubMed ID
nsv1000325 CNV gain 25217958

Additional Variant Information for LINC01461 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01461

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01461 Gene

Disorders for LINC01461 Gene

Additional Disease Information for LINC01461

No disorders were found for LINC01461 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01461 Gene

Publications for LINC01461 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for LINC01461 Gene

Sources for LINC01461 Gene