Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC01460 Gene

Subcategory (RNA class) for LINC01460 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01460 Gene

  • Long Intergenic Non-Protein Coding RNA 1460 2 3 5

External Ids for LINC01460 Gene

Summaries for LINC01460 Gene

GeneCards Summary for LINC01460 Gene

LINC01460 (Long Intergenic Non-Protein Coding RNA 1460) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01460 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01460 Gene

Genomics for LINC01460 Gene

GeneHancer (GH) Regulatory Elements for LINC01460 Gene

Promoters and enhancers for LINC01460 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J027714 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 650.7 +0.4 377 3.3 KLF17 SIN3A RARA ZNF335 ZNF121 GLIS2 EGR1 SCRT2 SMARCC1 REST LINC01460 LOC105374378 SNX17 FNDC4 KRTCAP3 OST4 TRIM54 GC02M027478
GH02J027734 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.8 -20.6 -20553 4.3 FOXA2 MLX ARID4B SIN3A ZNF48 YY1 ETS1 ZNF766 ELK1 ATF7 MRPL33 LINC01460 LOC102723530 PLB1 SNRPGP7 FLJ31356 FOSL2 FNDC4 RBKS LOC105374378
GH02J027680 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.4 +34.0 33973 3.5 HDGF PKNOX1 ATF1 FOXA2 ARID4B SIN3A ZNF48 ARID2 ZNF207 ZNF143 LINC01460 SLC4A1AP CCDC121 GPN1 ZNF512 C2orf16 SUPT7L LOC105374378 GC02M027478
GH02J027684 Enhancer 0.6 ENCODE dbSUPER 11.4 +30.7 30742 2.7 ZNF316 ZNF512 MAFK SLC4A1AP SUPT7L LINC01460 CCDC121 GPN1 ZNF512 C2orf16 KRTCAP3 OST4 LOC105374378
GH02J027953 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 4 -240.7 -240683 8.5 PKNOX1 MLX SIN3A YY1 FOS RUNX3 RXRA REST PPARG NFIL3 FOSL2 RBKS FLJ31356 FNDC4 C2orf16 CGREF1 LINC01460 BABAM2 GCKR LOC100422227
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01460 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01460 Gene

Genomic Locations for LINC01460 Gene
chr2:27,705,786-27,716,550
(GRCh38/hg38)
Size:
10,765 bases
Orientation:
Minus strand

Genomic View for LINC01460 Gene

Genes around LINC01460 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01460 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01460 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01460 Gene

Proteins for LINC01460 Gene

Post-translational modifications for LINC01460 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01460 Gene

Domains & Families for LINC01460 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01460 Gene

Function for LINC01460 Gene

Phenotypes From GWAS Catalog for LINC01460 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01460 Gene

Localization for LINC01460 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01460 Gene

Pathways & Interactions for LINC01460 Gene

SuperPathways for LINC01460 Gene

No Data Available

Interacting Proteins for LINC01460 Gene

Gene Ontology (GO) - Biological Process for LINC01460 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01460 Gene

Drugs & Compounds for LINC01460 Gene

No Compound Related Data Available

Transcripts for LINC01460 Gene

mRNA/cDNA for LINC01460 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01460 Gene

No ASD Table

Relevant External Links for LINC01460 Gene

GeneLoc Exon Structure for
LINC01460
ECgene alternative splicing isoforms for
LINC01460

Expression for LINC01460 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01460 Gene

Protein differential expression in normal tissues from HIPED for LINC01460 Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for LINC01460 Gene



Protein tissue co-expression partners for LINC01460 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01460 Gene:

LINC01460
genes like me logo Genes that share expression patterns with LINC01460: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01460 Gene

Orthologs for LINC01460 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01460 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 95 (a)
OneToOne
Species where no ortholog for LINC01460 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01460 Gene

ENSEMBL:
Gene Tree for LINC01460 (if available)
TreeFam:
Gene Tree for LINC01460 (if available)

Paralogs for LINC01460 Gene

No data available for Paralogs for LINC01460 Gene

Variants for LINC01460 Gene

Sequence variations from dbSNP and Humsavar for LINC01460 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000193046 -- 27,715,083(-) G/A intron_variant
rs1000234869 -- 27,717,530(-) G/C upstream_transcript_variant
rs1000255154 -- 27,714,836(-) T/A intron_variant
rs1000292911 -- 27,709,518(-) C/T intron_variant
rs1000528318 -- 27,707,835(-) C/T non_coding_transcript_variant

Additional Variant Information for LINC01460 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01460

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01460 Gene

Disorders for LINC01460 Gene

Additional Disease Information for LINC01460

No disorders were found for LINC01460 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01460 Gene

Publications for LINC01460 Gene

No publications were found for LINC01460 Gene.

Products for LINC01460 Gene

Sources for LINC01460 Gene

Content
Loading form....