Aliases for LINC01456 Gene

Subcategory (RNA class) for LINC01456 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01456 Gene

  • Long Intergenic Non-Protein Coding RNA 1456 2 3 5
  • LINC01456 2 5 165
  • NONHSAG054110.2 91
  • HSALNG0136866 164

External Ids for LINC01456 Gene

Previous GeneCards Identifiers for LINC01456 Gene

  • GC0XM017970

Summaries for LINC01456 Gene

GeneCards Summary for LINC01456 Gene

LINC01456 (Long Intergenic Non-Protein Coding RNA 1456) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01456 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01456 Gene

Genomics for LINC01456 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01456 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ018103 Promoter 0.7 EPDnew Ensembl 600.7 +0.5 544 1.8 LINC01456 piR-52368-174 piR-57176-670 SCML1 piR-33422-465 BEND2 RAI2
GH0XJ018098 Enhancer 0.8 ENCODE 0.4 +5.1 5116 1.5 CREB1 ZNF629 TARDBP ZIC2 GTF2F1 ZNF341 ATF7 ARNT HES1 ZBTB20 LINC01456 piR-52368-174 piR-33422-465 BEND2 RAI2
GH0XJ018075 Enhancer 0.6 Ensembl 0.3 +28.9 28944 1.4 PRDM10 ZNF629 ZNF692 ZNF501 ZNF341 SCRT2 ZXDB OSR2 SCRT1 ZNF189 piR-39098-286 LINC01456 piR-61101-706 BEND2 RAI2
GH0XJ018067 Enhancer 0.3 Ensembl 0.3 +38.1 38144 0.2 ZNF341 piR-39098-286 LINC01456 piR-61101-706 BEND2 RAI2
GH0XJ018065 Enhancer 0.3 Ensembl 0.3 +38.5 38544 0.2 ZNF341 SCML1 piR-39098-286 LINC01456 piR-61101-706 BEND2 RAI2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01456 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01456 Gene

Genomic Locations for LINC01456 Gene
chrX:17,894,135-18,104,645
(GRCh38/hg38)
Size:
210,511 bases
Orientation:
Minus strand
chrX:17,988,317-18,122,764
(GRCh37/hg19)
Size:
134,448 bases
Orientation:
Minus strand

Genomic View for LINC01456 Gene

Genes around LINC01456 on UCSC Golden Path with GeneCards custom track
LINC01456 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01456 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01456 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01456 Gene

Proteins for LINC01456 Gene

Post-translational modifications for LINC01456 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01456 Gene

Domains & Families for LINC01456 Gene

Gene Families for LINC01456 Gene

genes like me logo Genes that share domains with LINC01456: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01456 Gene

Function for LINC01456 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01456 Gene

Localization for LINC01456 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01456 Gene

Pathways & Interactions for LINC01456 Gene

PathCards logo

SuperPathways for LINC01456 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01456 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01456 Gene

Drugs & Compounds for LINC01456 Gene

No Compound Related Data Available

Transcripts for LINC01456 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01456 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008E399F_9606 lncRNA 732 3

HGNC: 50846,

RefSeq: NR_133641,

LNCipedia: LINC01456:5,

URS00003F41E9_9606 lncRNA 708 3

Ensembl: ENST00000453902 (view in UCSC) ,

LNCipedia: LINC01456:1,

NONCODE: NONHSAT136412.2,

URS0000D5A756_9606 lncRNA 1251 2

LncBook: HSALNT0280636,

LNCipedia: LINC01456:2,

URS0000D5CE61_9606 lncRNA 1049 2

LncBook: HSALNT0280635,

LNCipedia: LINC01456:3,

URS0000D5AFEF_9606 lncRNA 887 2

LncBook: HSALNT0280634,

LNCipedia: LINC01456:4,

LINC01456 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01456 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01456 Gene

No ASD Table

Relevant External Links for LINC01456 Gene

GeneLoc Exon Structure for
LINC01456

Expression for LINC01456 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01456 Gene

genes like me logo Genes that share expression patterns with LINC01456: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01456 Gene

Orthologs for LINC01456 Gene

Evolution for LINC01456 Gene

ENSEMBL:
Gene Tree for LINC01456 (if available)
TreeFam:
Gene Tree for LINC01456 (if available)

No data available for Orthologs for LINC01456 Gene

Paralogs for LINC01456 Gene

No data available for Paralogs for LINC01456 Gene

Variants for LINC01456 Gene

Additional dbSNP identifiers (rs#s) for LINC01456 Gene

Additional Variant Information for LINC01456 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01456

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01456 Gene

Disorders for LINC01456 Gene

No disorders were found for LINC01456 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01456 Gene

Publications for LINC01456 Gene

No publications were found for LINC01456 Gene.

Products for LINC01456 Gene

Sources for LINC01456 Gene