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Aliases for LINC01449 Gene

Subcategory (RNA class) for LINC01449 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01449 Gene

  • Long Intergenic Non-Protein Coding RNA 1449 2 3 5

External Ids for LINC01449 Gene

Summaries for LINC01449 Gene

GeneCards Summary for LINC01449 Gene

LINC01449 (Long Intergenic Non-Protein Coding RNA 1449) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01449 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01449 Gene

Genomics for LINC01449 Gene

GeneHancer (GH) Regulatory Elements for LINC01449 Gene

Promoters and enhancers for LINC01449 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I040436 Enhancer 0.9 Ensembl ENCODE 6.9 -663.5 -663507 3.7 FOXA2 TEAD1 JUN MAFG EP300 ETS1 YY1 TEAD3 MAFF JUND LINC01449 GC07M040368 GC07P040474 SUGCT
GH07I040921 Enhancer 0.9 FANTOM5 ENCODE 4.2 -178.9 -178854 2.9 JUN MAX CEBPB EP300 RAD21 ZFHX2 JUND STAT3 SMC3 FOS LINC01449 LOC105375242 LINC01450
GH07I040305 Enhancer 0.4 ENCODE 4.6 -795.3 -795271 2.6 ZNF316 BCL6B MAFK LINC01449 LOC105375245 GC07P040323 SUGCT
GH07I041102 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.8 +2.3 2332 2.4 EBF1 BATF RELA ATF7 ETV6 BCLAF1 IKZF2 RUNX3 SRF JUNB LINC01449 LOC105375241
GH07I041096 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.8 -3.8 -3792 2.6 SRF JUNB ATF7 FOS BATF RUNX3 ATF2 LINC01449 LINC01450
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01449 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01449 Gene

Genomic Locations for LINC01449 Gene
chr7:41,101,604-41,133,507
(GRCh38/hg38)
Size:
31,904 bases
Orientation:
Plus strand
chr7:41,141,202-41,173,105
(GRCh37/hg19)

Genomic View for LINC01449 Gene

Genes around LINC01449 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01449 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01449 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01449 Gene

Proteins for LINC01449 Gene

Post-translational modifications for LINC01449 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01449 Gene

Domains & Families for LINC01449 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01449 Gene

Function for LINC01449 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01449 Gene

Localization for LINC01449 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01449 Gene

Pathways & Interactions for LINC01449 Gene

SuperPathways for LINC01449 Gene

No Data Available

Interacting Proteins for LINC01449 Gene

Gene Ontology (GO) - Biological Process for LINC01449 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01449 Gene

Drugs & Compounds for LINC01449 Gene

No Compound Related Data Available

Transcripts for LINC01449 Gene

mRNA/cDNA for LINC01449 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01449 Gene

No ASD Table

Relevant External Links for LINC01449 Gene

GeneLoc Exon Structure for
LINC01449
ECgene alternative splicing isoforms for
LINC01449

Expression for LINC01449 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01449 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01449 Gene:

LINC01449
genes like me logo Genes that share expression patterns with LINC01449: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01449 Gene

Orthologs for LINC01449 Gene

Evolution for LINC01449 Gene

ENSEMBL:
Gene Tree for LINC01449 (if available)
TreeFam:
Gene Tree for LINC01449 (if available)

No data available for Orthologs for LINC01449 Gene

Paralogs for LINC01449 Gene

No data available for Paralogs for LINC01449 Gene

Variants for LINC01449 Gene

Sequence variations from dbSNP and Humsavar for LINC01449 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000012323 -- 41,116,137(+) T/G intron_variant
rs1000047697 -- 41,109,553(+) C/T intron_variant
rs1000288282 -- 41,127,504(+) C/T intron_variant
rs1000466597 -- 41,128,092(+) A/C intron_variant
rs1000481775 -- 41,121,868(+) T/C intron_variant

Additional Variant Information for LINC01449 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01449

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01449 Gene

Disorders for LINC01449 Gene

Additional Disease Information for LINC01449

No disorders were found for LINC01449 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01449 Gene

Publications for LINC01449 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01449 Gene

Sources for LINC01449 Gene

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