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Aliases for LINC01448 Gene

Subcategory (RNA class) for LINC01448 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01448 Gene

  • Long Intergenic Non-Protein Coding RNA 1448 2 3 5

External Ids for LINC01448 Gene

Summaries for LINC01448 Gene

GeneCards Summary for LINC01448 Gene

LINC01448 (Long Intergenic Non-Protein Coding RNA 1448) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01448 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01448 Gene

Genomics for LINC01448 Gene

GeneHancer (GH) Regulatory Elements for LINC01448 Gene

Promoters and enhancers for LINC01448 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J042231 Promoter/Enhancer 2.3 UCNEbase Ensembl ENCODE dbSUPER 14.6 +470.7 470657 7.6 PKNOX1 SIN3A FEZF1 GLI4 ZNF2 ZBTB7B YY1 GLIS2 ZNF213 ZNF143 HECW1-IT1 LINC01448 MIR3943 GLI3 GC07P042154
GH07J042830 Enhancer 0.8 ENCODE 14.7 -125.1 -125089 2.1 CTCF ZSCAN18 ZNF792 ZBTB21 ZNF266 BMI1 RAD21 GATA3 SMC3 ZBTB20 ENSG00000228680 HECW1-IT1 LINC01448 MIR3943 RPL18AP10 ENSG00000231539 GC07M042842 TCP1P1
GH07J042671 Enhancer 0.7 ENCODE 0.3 +34.2 34245 1.6 ZBTB21 JUN ZNF366 SCRT2 FOS CEBPB ZFP37 ZNF398 ATF2 EP300 LOC105375251 LINC01448
GH07J042660 Enhancer 0.6 ENCODE 0.3 +45.0 44960 1.1 JUN MAX CEBPB CEBPG EP300 FOSL1 ATF4 JUND SCRT2 STAT3 GLI3 LOC105375251 LINC01448
GH07J042746 Enhancer 0.6 ENCODE 0.3 -40.9 -40926 0.9 ZNF148 RFX1 ZBTB21 ZNF629 CREB1 ATF7 BMI1 ATF2 LINC01448 TCP1P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01448 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01448 Gene

Genomic Locations for LINC01448 Gene
chr7:42,661,726-42,706,447
(GRCh38/hg38)
Size:
44,722 bases
Orientation:
Minus strand
chr7:42,701,325-42,746,046
(GRCh37/hg19)
Size:
44,722 bases
Orientation:
Minus strand

Genomic View for LINC01448 Gene

Genes around LINC01448 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01448 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01448 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01448 Gene

Proteins for LINC01448 Gene

Post-translational modifications for LINC01448 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01448 Gene

Domains & Families for LINC01448 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01448 Gene

Function for LINC01448 Gene

Phenotypes From GWAS Catalog for LINC01448 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01448 Gene

Localization for LINC01448 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01448 Gene

Pathways & Interactions for LINC01448 Gene

SuperPathways for LINC01448 Gene

No Data Available

Interacting Proteins for LINC01448 Gene

Gene Ontology (GO) - Biological Process for LINC01448 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01448 Gene

Drugs & Compounds for LINC01448 Gene

No Compound Related Data Available

Transcripts for LINC01448 Gene

mRNA/cDNA for LINC01448 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01448 Gene

No ASD Table

Relevant External Links for LINC01448 Gene

GeneLoc Exon Structure for
LINC01448
ECgene alternative splicing isoforms for
LINC01448

Expression for LINC01448 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01448 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01448 Gene:

LINC01448
genes like me logo Genes that share expression patterns with LINC01448: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01448 Gene

Orthologs for LINC01448 Gene

Evolution for LINC01448 Gene

ENSEMBL:
Gene Tree for LINC01448 (if available)
TreeFam:
Gene Tree for LINC01448 (if available)

No data available for Orthologs for LINC01448 Gene

Paralogs for LINC01448 Gene

No data available for Paralogs for LINC01448 Gene

Variants for LINC01448 Gene

Sequence variations from dbSNP and Humsavar for LINC01448 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000045102 -- 42,663,052(-) G/A intron_variant
rs1000054204 -- 42,706,919(-) A/G upstream_transcript_variant
rs1000111211 -- 42,665,741(-) C/G intron_variant
rs1000168160 -- 42,694,239(-) G/A intron_variant
rs1000213697 -- 42,688,295(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01448 Gene

Variant ID Type Subtype PubMed ID
nsv606715 CNV gain 21841781
nsv5719 CNV insertion 18451855
esv3612974 CNV loss 21293372

Additional Variant Information for LINC01448 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01448

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01448 Gene

Disorders for LINC01448 Gene

Additional Disease Information for LINC01448

No disorders were found for LINC01448 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01448 Gene

Publications for LINC01448 Gene

No publications were found for LINC01448 Gene.

Products for LINC01448 Gene

Sources for LINC01448 Gene

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