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Aliases for LINC01447 Gene

Subcategory (RNA class) for LINC01447 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01447 Gene

  • Long Intergenic Non-Protein Coding RNA 1447 2 3 5

External Ids for LINC01447 Gene

Summaries for LINC01447 Gene

GeneCards Summary for LINC01447 Gene

LINC01447 (Long Intergenic Non-Protein Coding RNA 1447) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01447 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01447 Gene

Genomics for LINC01447 Gene

GeneHancer (GH) Regulatory Elements for LINC01447 Gene

Promoters and enhancers for LINC01447 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I047620 Enhancer 1.2 Ensembl ENCODE dbSUPER 550.8 +0.5 537 3.1 ELF3 FOXA2 MLX ARID4B DMAP1 RAD21 THRB ZNF48 ZSCAN9 RARA LINC01447 TNS3 C7orf65 C7orf69
GH07I047633 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +16.1 16123 8.3 ELF3 FOXA2 ZFP64 ZSCAN4 ARID4B SIN3A ZNF48 RAD21 RARA ZNF335 TNS3 C7orf69 ENSG00000225507 C7orf65 LINC01447
GH07I047603 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -16.7 -16681 3.7 FOXA2 MLX ARID4B NEUROD1 SIN3A DMAP1 BRCA1 ETS1 YY1 RXRA TNS3 C7orf65 C7orf69 LINC01447
GH07I047609 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -11.3 -11322 2.5 ELF3 FOXA2 ARID4B DMAP1 DNMT3B ZSCAN9 RAD21 RARA YY1 FOS TNS3 C7orf65 LINC01447
GH07I047599 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -20.5 -20505 3.2 TFAP4 FOXA2 JUN ARID4B MAX SIN3A RFX5 TEAD3 GATA3 POLR2A C7orf65 C7orf69 TNS3 LINC01447
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01447 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01447 Gene

Genomic Locations for LINC01447 Gene
chr7:47,621,939-47,629,893
(GRCh38/hg38)
Size:
7,955 bases
Orientation:
Plus strand
chr7:47,661,537-47,669,491
(GRCh37/hg19)

Genomic View for LINC01447 Gene

Genes around LINC01447 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01447 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01447 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01447 Gene

Proteins for LINC01447 Gene

Post-translational modifications for LINC01447 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01447 Gene

Domains & Families for LINC01447 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01447 Gene

Function for LINC01447 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01447 Gene

Localization for LINC01447 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01447 Gene

Pathways & Interactions for LINC01447 Gene

SuperPathways for LINC01447 Gene

No Data Available

Interacting Proteins for LINC01447 Gene

Gene Ontology (GO) - Biological Process for LINC01447 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01447 Gene

Drugs & Compounds for LINC01447 Gene

No Compound Related Data Available

Transcripts for LINC01447 Gene

mRNA/cDNA for LINC01447 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01447 Gene

No ASD Table

Relevant External Links for LINC01447 Gene

GeneLoc Exon Structure for
LINC01447
ECgene alternative splicing isoforms for
LINC01447

Expression for LINC01447 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01447 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01447 Gene:

LINC01447
genes like me logo Genes that share expression patterns with LINC01447: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01447 Gene

Orthologs for LINC01447 Gene

Evolution for LINC01447 Gene

ENSEMBL:
Gene Tree for LINC01447 (if available)
TreeFam:
Gene Tree for LINC01447 (if available)

No data available for Orthologs for LINC01447 Gene

Paralogs for LINC01447 Gene

No data available for Paralogs for LINC01447 Gene

Variants for LINC01447 Gene

Sequence variations from dbSNP and Humsavar for LINC01447 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000008788 -- 47,628,316(+) G/C intron_variant
rs1000252236 -- 47,629,510(+) C/T non_coding_transcript_variant
rs1000305509 -- 47,622,591(+) G/A intron_variant
rs1000534685 -- 47,625,007(+) C/A intron_variant
rs1000591295 -- 47,628,762(+) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01447 Gene

Variant ID Type Subtype PubMed ID
esv3613064 CNV gain 21293372
esv3613065 CNV gain 21293372
nsv509196 CNV insertion 20534489
nsv7395 OTHER inversion 18451855

Additional Variant Information for LINC01447 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01447

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01447 Gene

Disorders for LINC01447 Gene

Additional Disease Information for LINC01447

No disorders were found for LINC01447 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01447 Gene

Publications for LINC01447 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC01447 Gene

Sources for LINC01447 Gene

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