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Aliases for LINC01446 Gene

Subcategory (RNA class) for LINC01446 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01446 Gene

  • Long Intergenic Non-Protein Coding RNA 1446 2 3 5
  • GS1-179L18.1 3

External Ids for LINC01446 Gene

Summaries for LINC01446 Gene

GeneCards Summary for LINC01446 Gene

LINC01446 (Long Intergenic Non-Protein Coding RNA 1446) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01446 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01446 Gene

Genomics for LINC01446 Gene

GeneHancer (GH) Regulatory Elements for LINC01446 Gene

Promoters and enhancers for LINC01446 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I053811 Enhancer 0.8 ENCODE 550.8 +0.1 93 0.6 PKNOX1 ATF1 TAF9B NFRKB YY1 POLR2B FOS PHF21A SMAD5 CEBPB LINC01446 ENSG00000232418
GH07I053723 Enhancer 0.2 FANTOM5 0.2 +87.9 87879 0.4 GC07M053699 GC07P053776 LINC01446
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01446 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01446 Gene

Genomic Locations for LINC01446 Gene
chr7:53,655,509-53,811,931
(GRCh38/hg38)
Size:
156,423 bases
Orientation:
Minus strand
chr7:53,723,202-53,879,624
(GRCh37/hg19)

Genomic View for LINC01446 Gene

Genes around LINC01446 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01446 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01446 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01446 Gene

Proteins for LINC01446 Gene

Post-translational modifications for LINC01446 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01446 Gene

Domains & Families for LINC01446 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01446 Gene

Function for LINC01446 Gene

Phenotypes From GWAS Catalog for LINC01446 Gene

Phenotypes for LINC01446 Gene

GenomeRNAi human phenotypes for LINC01446:
genes like me logo Genes that share phenotypes with LINC01446: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01446 Gene

Localization for LINC01446 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01446 Gene

Pathways & Interactions for LINC01446 Gene

SuperPathways for LINC01446 Gene

No Data Available

Interacting Proteins for LINC01446 Gene

Gene Ontology (GO) - Biological Process for LINC01446 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01446 Gene

Drugs & Compounds for LINC01446 Gene

No Compound Related Data Available

Transcripts for LINC01446 Gene

mRNA/cDNA for LINC01446 Gene

(1) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01446 Gene

No ASD Table

Relevant External Links for LINC01446 Gene

GeneLoc Exon Structure for
LINC01446
ECgene alternative splicing isoforms for
LINC01446

Expression for LINC01446 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01446 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01446 Gene:

LINC01446
genes like me logo Genes that share expression patterns with LINC01446: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01446 Gene

Orthologs for LINC01446 Gene

Evolution for LINC01446 Gene

ENSEMBL:
Gene Tree for LINC01446 (if available)
TreeFam:
Gene Tree for LINC01446 (if available)

No data available for Orthologs for LINC01446 Gene

Paralogs for LINC01446 Gene

No data available for Paralogs for LINC01446 Gene

Variants for LINC01446 Gene

Sequence variations from dbSNP and Humsavar for LINC01446 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000011089 -- 53,730,451(-) T/C intron_variant
rs1000062226 -- 53,764,727(-) C/T intron_variant
rs1000063039 -- 53,726,874(-) T/C intron_variant
rs1000069238 -- 53,764,090(-) C/T intron_variant
rs1000083090 -- 53,742,203(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01446 Gene

Variant ID Type Subtype PubMed ID
esv1704600 CNV deletion 17803354
esv3767 CNV loss 18987735
nsv1022136 CNV gain 25217958
nsv365836 CNV deletion 16902084
nsv475287 CNV novel sequence insertion 20440878
nsv518399 CNV loss 19592680
nsv522664 CNV loss 19592680
nsv831006 CNV loss 17160897

Additional Variant Information for LINC01446 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01446

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01446 Gene

Disorders for LINC01446 Gene

Additional Disease Information for LINC01446

No disorders were found for LINC01446 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01446 Gene

Publications for LINC01446 Gene

No publications were found for LINC01446 Gene.

Products for LINC01446 Gene

Sources for LINC01446 Gene

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