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Aliases for LINC01445 Gene

Subcategory (RNA class) for LINC01445 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01445 Gene

  • Long Intergenic Non-Protein Coding RNA 1445 2 3 5

External Ids for LINC01445 Gene

Summaries for LINC01445 Gene

GeneCards Summary for LINC01445 Gene

LINC01445 (Long Intergenic Non-Protein Coding RNA 1445) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01445 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01445 Gene

Genomics for LINC01445 Gene

GeneHancer (GH) Regulatory Elements for LINC01445 Gene

Promoters and enhancers for LINC01445 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J054291 Enhancer 0.4 ENCODE 0.3 -38.3 -38286 0.9 POLR2A BACH1 VSTM2A GC07M054232 GC07P054271 LINC01445
GH07J054349 Enhancer 0.2 ENCODE 0.4 +18.8 18756 0.2 GC07M054350 GC07M054338 GC07P054344 LINC01445
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01445 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01445 Gene

Genomic Locations for LINC01445 Gene
chr7:54,330,697-54,349,849
(GRCh38/hg38)
Size:
19,153 bases
Orientation:
Plus strand
chr7:54,398,390-54,417,542
(GRCh37/hg19)
Size:
19,153 bases
Orientation:
Plus strand

Genomic View for LINC01445 Gene

Genes around LINC01445 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01445 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01445 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01445 Gene

Proteins for LINC01445 Gene

Post-translational modifications for LINC01445 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01445 Gene

Domains & Families for LINC01445 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01445 Gene

Function for LINC01445 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01445 Gene

Localization for LINC01445 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01445 Gene

Pathways & Interactions for LINC01445 Gene

SuperPathways for LINC01445 Gene

No Data Available

Interacting Proteins for LINC01445 Gene

Gene Ontology (GO) - Biological Process for LINC01445 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01445 Gene

Drugs & Compounds for LINC01445 Gene

No Compound Related Data Available

Transcripts for LINC01445 Gene

mRNA/cDNA for LINC01445 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01445 Gene

No ASD Table

Relevant External Links for LINC01445 Gene

GeneLoc Exon Structure for
LINC01445
ECgene alternative splicing isoforms for
LINC01445

Expression for LINC01445 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01445 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01445 Gene:

LINC01445
genes like me logo Genes that share expression patterns with LINC01445: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01445 Gene

Orthologs for LINC01445 Gene

Evolution for LINC01445 Gene

ENSEMBL:
Gene Tree for LINC01445 (if available)
TreeFam:
Gene Tree for LINC01445 (if available)

No data available for Orthologs for LINC01445 Gene

Paralogs for LINC01445 Gene

No data available for Paralogs for LINC01445 Gene

Variants for LINC01445 Gene

Sequence variations from dbSNP and Humsavar for LINC01445 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000016765 -- 54,345,559(+) A/G intron_variant
rs1000437615 -- 54,331,707(+) T/G intron_variant
rs1000533278 -- 54,342,475(+) A/G intron_variant
rs1000563913 -- 54,336,595(+) G/T intron_variant
rs1000598485 -- 54,343,717(+) C/A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01445 Gene

Variant ID Type Subtype PubMed ID
nsv831007 CNV gain 17160897
nsv7397 OTHER inversion 18451855
nsv1125909 CNV tandem duplication 24896259
nsv1024361 CNV gain 25217958
nsv1018999 CNV gain 25217958
esv5018 CNV loss 18987735
esv3613216 CNV gain 21293372
esv3613215 CNV loss 21293372
esv3576356 CNV gain 25503493
esv2762670 CNV loss 21179565
esv2734425 CNV deletion 23290073
dgv815n27 CNV gain 19166990
dgv11352n54 CNV gain 21841781

Additional Variant Information for LINC01445 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01445

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01445 Gene

Disorders for LINC01445 Gene

Additional Disease Information for LINC01445

No disorders were found for LINC01445 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01445 Gene

Publications for LINC01445 Gene

No publications were found for LINC01445 Gene.

Products for LINC01445 Gene

Sources for LINC01445 Gene

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