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Aliases for LINC01443 Gene

Subcategory (RNA class) for LINC01443 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01443 Gene

  • Long Intergenic Non-Protein Coding RNA 1443 2 3 5

External Ids for LINC01443 Gene

Summaries for LINC01443 Gene

GeneCards Summary for LINC01443 Gene

LINC01443 (Long Intergenic Non-Protein Coding RNA 1443) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01443 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01443 Gene

Genomics for LINC01443 Gene

GeneHancer (GH) Regulatory Elements for LINC01443 Gene

Promoters and enhancers for LINC01443 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18I014945 Enhancer 0.2 dbSUPER 555 -0.3 -309 1.2 LINC01443 LOC105372009 LOC105372010
GH18I014935 Enhancer 0.5 ENCODE dbSUPER 6 -9.7 -9703 1.3 HNF4A LINC01443 LOC105372010 LOC105372009
GH18I014941 Enhancer 0.2 dbSUPER 4.9 -4.3 -4296 1.5 LINC01443 LOC105372010
GH18I014918 Enhancer 0.8 ENCODE dbSUPER 0.3 -25.4 -25365 4.2 CTCF FOXA2 NFIA MAX RAD21 FOXA1 YY1 ZFHX2 GATA3 HNF4G LOC105372009 LOC105372010 LINC01443
GH18I014932 Enhancer 0.5 ENCODE dbSUPER 0.4 -12.2 -12211 2.9 CTCF LOC105372009 LINC01443 LOC105372010
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01443 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01443 Gene

Genomic Locations for LINC01443 Gene
chr18:14,946,267-14,973,770
(GRCh38/hg38)
Size:
27,504 bases
Orientation:
Plus strand
chr18:14,946,266-14,973,769
(GRCh37/hg19)

Genomic View for LINC01443 Gene

Genes around LINC01443 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01443 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01443 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01443 Gene

Proteins for LINC01443 Gene

Post-translational modifications for LINC01443 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01443 Gene

Domains & Families for LINC01443 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01443 Gene

Function for LINC01443 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01443 Gene

Localization for LINC01443 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01443 Gene

Pathways & Interactions for LINC01443 Gene

SuperPathways for LINC01443 Gene

No Data Available

Interacting Proteins for LINC01443 Gene

Gene Ontology (GO) - Biological Process for LINC01443 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01443 Gene

Drugs & Compounds for LINC01443 Gene

No Compound Related Data Available

Transcripts for LINC01443 Gene

mRNA/cDNA for LINC01443 Gene

(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01443 Gene

No ASD Table

Relevant External Links for LINC01443 Gene

GeneLoc Exon Structure for
LINC01443
ECgene alternative splicing isoforms for
LINC01443

Expression for LINC01443 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01443 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01443 Gene:

LINC01443
genes like me logo Genes that share expression patterns with LINC01443: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01443 Gene

Orthologs for LINC01443 Gene

Evolution for LINC01443 Gene

ENSEMBL:
Gene Tree for LINC01443 (if available)
TreeFam:
Gene Tree for LINC01443 (if available)

No data available for Orthologs for LINC01443 Gene

Paralogs for LINC01443 Gene

No data available for Paralogs for LINC01443 Gene

Variants for LINC01443 Gene

Sequence variations from dbSNP and Humsavar for LINC01443 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000103425 -- 14,973,564(+) G/T non_coding_transcript_variant
rs1000297781 -- 14,951,762(+) T/A intron_variant
rs1000352107 -- 14,952,037(+) T/C intron_variant
rs1000601676 -- 14,957,954(+) C/G intron_variant
rs1000798271 -- 14,944,962(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01443 Gene

Variant ID Type Subtype PubMed ID
esv2716845 CNV deletion 23290073
esv2751771 CNV loss 17911159
esv2758715 CNV gain 17122850
esv2761993 CNV gain 21179565
esv33381 CNV gain 17666407
esv3641918 CNV loss 21293372
nsv437822 CNV loss 16327808
nsv526858 CNV gain 19592680
nsv576542 CNV gain 21841781
nsv576543 CNV loss 21841781
nsv961035 CNV duplication 23825009

Additional Variant Information for LINC01443 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01443

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01443 Gene

Disorders for LINC01443 Gene

Additional Disease Information for LINC01443

No disorders were found for LINC01443 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01443 Gene

Publications for LINC01443 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01443 Gene

Sources for LINC01443 Gene

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