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Aliases for LINC01442 Gene

Subcategory (RNA class) for LINC01442 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01442 Gene

  • Long Intergenic Non-Protein Coding RNA 1442 2 3 5

External Ids for LINC01442 Gene

Summaries for LINC01442 Gene

GeneCards Summary for LINC01442 Gene

LINC01442 (Long Intergenic Non-Protein Coding RNA 1442) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01442 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01442 Gene

Genomics for LINC01442 Gene

GeneHancer (GH) Regulatory Elements for LINC01442 Gene

Promoters and enhancers for LINC01442 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J060922 Enhancer 0.2 ENCODE 0.4 +5.7 5689 0.6 LINC01442 GC13M060979
GH13J060974 Enhancer 0.2 ENCODE 0.2 +57.4 57441 0.2 GC13M060979 LINC01442
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01442 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01442 Gene

Genomic Locations for LINC01442 Gene
chr13:60,917,001-60,941,768
(GRCh38/hg38)
Size:
24,768 bases
Orientation:
Plus strand
chr13:61,491,176-61,494,141
(GRCh37/hg19)
Size:
2,966 bases
Orientation:
Plus strand

Genomic View for LINC01442 Gene

Genes around LINC01442 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01442 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01442 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01442 Gene

Proteins for LINC01442 Gene

Post-translational modifications for LINC01442 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01442 Gene

Domains & Families for LINC01442 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01442 Gene

Function for LINC01442 Gene

Phenotypes From GWAS Catalog for LINC01442 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01442 Gene

Localization for LINC01442 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01442 Gene

Pathways & Interactions for LINC01442 Gene

SuperPathways for LINC01442 Gene

No Data Available

Interacting Proteins for LINC01442 Gene

Gene Ontology (GO) - Biological Process for LINC01442 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01442 Gene

Drugs & Compounds for LINC01442 Gene

No Compound Related Data Available

Transcripts for LINC01442 Gene

mRNA/cDNA for LINC01442 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01442 Gene

No ASD Table

Relevant External Links for LINC01442 Gene

GeneLoc Exon Structure for
LINC01442
ECgene alternative splicing isoforms for
LINC01442

Expression for LINC01442 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01442 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01442 Gene:

LINC01442
genes like me logo Genes that share expression patterns with LINC01442: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01442 Gene

Orthologs for LINC01442 Gene

Evolution for LINC01442 Gene

ENSEMBL:
Gene Tree for LINC01442 (if available)
TreeFam:
Gene Tree for LINC01442 (if available)

No data available for Orthologs for LINC01442 Gene

Paralogs for LINC01442 Gene

No data available for Paralogs for LINC01442 Gene

Variants for LINC01442 Gene

Sequence variations from dbSNP and Humsavar for LINC01442 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000023303 -- 60,807,866(+) A/G genic_upstream_transcript_variant, intron_variant
rs1000031031 -- 60,918,541(+) T/C genic_upstream_transcript_variant, intron_variant
rs1000055738 -- 60,844,050(+) A/C genic_upstream_transcript_variant, intron_variant
rs1000066441 -- 60,881,858(+) A/G genic_upstream_transcript_variant, intron_variant
rs1000084501 -- 60,901,262(+) G/A genic_upstream_transcript_variant, intron_variant

Additional Variant Information for LINC01442 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01442

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01442 Gene

Disorders for LINC01442 Gene

No disorders were found for LINC01442 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01442 Gene

Publications for LINC01442 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC01442 Gene

Sources for LINC01442 Gene

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