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Aliases for LINC01441 Gene

Subcategory (RNA class) for LINC01441 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01441 Gene

  • Long Intergenic Non-Protein Coding RNA 1441 2 3 5

External Ids for LINC01441 Gene

Summaries for LINC01441 Gene

GeneCards Summary for LINC01441 Gene

LINC01441 (Long Intergenic Non-Protein Coding RNA 1441) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01441 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01441 Gene

Genomics for LINC01441 Gene

GeneHancer (GH) Regulatory Elements for LINC01441 Gene

Promoters and enhancers for LINC01441 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J056390 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.6 -965.2 -965237 3.8 CLOCK MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 CSTF1 AURKA ENSG00000280387 LINC01716 ENSG00000231078 ENSG00000203266 LINC01441 LINC01440 BMP7-AS1 SPO11
GH20J055423 Enhancer 0.3 ENCODE 0.7 +3.8 3849 0.2 CEBPG LINC01441 LINC01440
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01441 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01441 Gene

Genomic Locations for LINC01441 Gene
chr20:55,420,336-55,427,197
(GRCh38/hg38)
Size:
6,862 bases
Orientation:
Minus strand
chr20:54,036,874-54,043,735
(GRCh37/hg19)
Size:
6,862 bases
Orientation:
Minus strand

Genomic View for LINC01441 Gene

Genes around LINC01441 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01441 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01441 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01441 Gene

Proteins for LINC01441 Gene

Post-translational modifications for LINC01441 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01441 Gene

Domains & Families for LINC01441 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01441 Gene

Function for LINC01441 Gene

Phenotypes From GWAS Catalog for LINC01441 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01441 Gene

Localization for LINC01441 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01441 Gene

Pathways & Interactions for LINC01441 Gene

SuperPathways for LINC01441 Gene

No Data Available

Interacting Proteins for LINC01441 Gene

Gene Ontology (GO) - Biological Process for LINC01441 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01441 Gene

Drugs & Compounds for LINC01441 Gene

No Compound Related Data Available

Transcripts for LINC01441 Gene

mRNA/cDNA for LINC01441 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01441 Gene

No ASD Table

Relevant External Links for LINC01441 Gene

GeneLoc Exon Structure for
LINC01441
ECgene alternative splicing isoforms for
LINC01441

Expression for LINC01441 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01441 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01441 Gene:

LINC01441
genes like me logo Genes that share expression patterns with LINC01441: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01441 Gene

Orthologs for LINC01441 Gene

Evolution for LINC01441 Gene

ENSEMBL:
Gene Tree for LINC01441 (if available)
TreeFam:
Gene Tree for LINC01441 (if available)

No data available for Orthologs for LINC01441 Gene

Paralogs for LINC01441 Gene

No data available for Paralogs for LINC01441 Gene

Variants for LINC01441 Gene

Sequence variations from dbSNP and Humsavar for LINC01441 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1001926987 -- 55,424,299(-) A/G intron_variant
rs1002498214 -- 55,421,142(-) A/C/G non_coding_transcript_variant
rs1003508802 -- 55,420,931(-) A/G non_coding_transcript_variant
rs1004056488 -- 55,424,578(-) T/G intron_variant
rs1004107400 -- 55,424,278(-) C/A intron_variant

Additional Variant Information for LINC01441 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01441

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01441 Gene

Disorders for LINC01441 Gene

Additional Disease Information for LINC01441

No disorders were found for LINC01441 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01441 Gene

Publications for LINC01441 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC01441 Gene

Sources for LINC01441 Gene

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