Aliases for LINC01440 Gene

Subcategory (RNA class) for LINC01440 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01440 Gene

  • Long Intergenic Non-Protein Coding RNA 1440 2 3 5
  • LINC01440 2 168
  • NONHSAG032072 92
  • HSALNG0131017 167

External Ids for LINC01440 Gene

Summaries for LINC01440 Gene

GeneCards Summary for LINC01440 Gene

LINC01440 (Long Intergenic Non-Protein Coding RNA 1440) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01440 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01440 Gene

Genomics for LINC01440 Gene

GeneHancer (GH) Regulatory Elements for LINC01440 Gene

Promoters and enhancers for LINC01440 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J055423 Enhancer 0.6 Ensembl ENCODE 0.4 +14.9 14903 2.8 HDAC2 NANOG MNT CEBPG LINC01441 LINC01440
GH20J055396 Enhancer 0.2 FANTOM5 0.4 -12.7 -12726 0.2 LINC01440 piR-41689-010
GH20J055473 Enhancer 0.3 Ensembl 0.2 +65.0 65003 1.4 HNRNPK PCBP1 ENSG00000275923 LINC01441 LINC01440
GH20J055578 Enhancer 0.7 Ensembl 0.1 +170.9 170903 2 ZFX DDX20 ELF1 SIX4 PAX8 SNIP1 ZNF574 ZBTB40 TOE1 CSDE1 CSTF1 ENSG00000280387 GCNT7 piR-33614-182 ENSG00000275923 LOC105372676 LINC01440
GH20J055488 Enhancer 0.3 Ensembl 0.2 +79.7 79703 0.4 FOS ENSG00000275923 LINC01441 LINC01440
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01440 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01440 Gene

Genomic Locations for LINC01440 Gene
chr20:55,408,898-55,684,915
(GRCh38/hg38)
Size:
276,018 bases
Orientation:
Plus strand

Genomic View for LINC01440 Gene

Genes around LINC01440 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01440 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01440 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01440 Gene

Proteins for LINC01440 Gene

Post-translational modifications for LINC01440 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01440 Gene

Domains & Families for LINC01440 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01440 Gene

Function for LINC01440 Gene

Phenotypes From GWAS Catalog for LINC01440 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01440 Gene

Localization for LINC01440 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01440 Gene

Pathways & Interactions for LINC01440 Gene

PathCards logo

SuperPathways for LINC01440 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01440 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01440 Gene

Drugs & Compounds for LINC01440 Gene

No Compound Related Data Available

Transcripts for LINC01440 Gene

mRNA/cDNA for LINC01440 Gene

22 RNACentral transcripts :
1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
15 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
11 NONCODE transcripts :
9 LncBook transcripts :
13 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01440 Gene

No ASD Table

Relevant External Links for LINC01440 Gene

GeneLoc Exon Structure for
LINC01440

Expression for LINC01440 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01440 Gene

genes like me logo Genes that share expression patterns with LINC01440: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01440 Gene

Orthologs for LINC01440 Gene

Evolution for LINC01440 Gene

ENSEMBL:
Gene Tree for LINC01440 (if available)
TreeFam:
Gene Tree for LINC01440 (if available)

No data available for Orthologs for LINC01440 Gene

Paralogs for LINC01440 Gene

No data available for Paralogs for LINC01440 Gene

Variants for LINC01440 Gene

Additional dbSNP identifiers (rs#s) for LINC01440 Gene

Additional Variant Information for LINC01440 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01440

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01440 Gene

Disorders for LINC01440 Gene

Additional Disease Information for LINC01440

No disorders were found for LINC01440 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01440 Gene

Publications for LINC01440 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LINC01440 Gene

Products for LINC01440 Gene

Sources for LINC01440 Gene