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Aliases for LINC01436 Gene
Subcategory (RNA class) for LINC01436 Gene
lncRNA
Aliases for LINC01436 Gene
External Ids for LINC01436 Gene
- HGNC: 50754
- NCBI Entrez Gene: 100996609
- Ensembl: ENSG00000231106
Summaries for LINC01436 Gene
GeneCards Summary for LINC01436 Gene
LINC01436 (Long Intergenic Non-Protein Coding RNA 1436) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01436 include Turner Syndrome.
Additional gene information for LINC01436 Gene
- HGNC (50754)
- NCBI Entrez Gene (100996609)
- Ensembl (ENSG00000231106)
- Open Targets Platform(ENSG00000231106)
- Search for LINC01436 at DataMed
- Search for LINC01436 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01436 Gene
Genomics for LINC01436 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01436 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01436 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01436 Gene
Latest Assembly
- chr21:36,004,564-36,008,894
- (GRCh38/hg38)
- Size:
- 4,331 bases
- Orientation:
- Plus strand
Previous Assembly
- chr21:37,377,618-37,380,593
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 2,976 bases
- Orientation:
- Plus strand
- chr21:37,377,636-37,380,136
- (GRCh37/hg19 by Ensembl)
- Size:
- 2,501 bases
- Orientation:
- Plus strand
Genomic View for LINC01436 Gene
Genes around LINC01436 on UCSC Golden Path with GeneCards custom track
LINC01436 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 21q22.12 by HGNC
- 21q22.12 by Entrez Gene
- 21q22.12 by Ensembl
LINC01436 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01436 Gene
Proteins for LINC01436 Gene
Post-translational modifications for LINC01436 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC01436 Gene
Domains & Families for LINC01436 Gene
Gene Families for LINC01436 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01436 Gene
Function for LINC01436 Gene
Phenotypes From GWAS Catalog for LINC01436 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01436 Gene
Localization for LINC01436 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01436 Gene
Transcripts for LINC01436 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01436 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075C2DF_9606 | lncRNA | 1523 | 3 |
RefSeq: NR_110419, LncBook: HSALNT0273205, LNCipedia: LINC01436:1, |
| URS000000BDFC_9606 | lncRNA | 1050 | 2 |
Ensembl: ENST00000457157 (view in UCSC) , LNCipedia: LINC01436:3, |
| URS00008B8DBF_9606 | lncRNA | 813 | 2 |
LNCipedia: LINC01436:2, NONCODE: NONHSAT081928.2, |
| URS00009C3680_9606 | lncRNA | 811 | 2 |
LncBook: HSALNT0273206, NONCODE: NONHSAT190933.1, |
| URS0001BF43F0_9606 | lncRNA | 2455 | 1 |
LncBook: HSALNT0273202, |
LINC01436 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01436 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC01436 Gene
- GeneLoc Exon Structure for
- LINC01436
Expression for LINC01436 Gene
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01436 Gene
Orthologs for LINC01436 Gene
No data available for Orthologs for LINC01436 Gene
Paralogs for LINC01436 Gene
No data available for Paralogs for LINC01436 Gene
Variants for LINC01436 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC01436 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01436
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01436 Gene
Disorders for LINC01436 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| turner syndrome |
|
|
Search LINC01436 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LINC01436
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01436 Gene
Publications for LINC01436 Gene
- Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome. (PMID: 24932682) Rajpathak SN … Deobagkar DD (PloS one 2014) 2 3
- LINC01436, regulating miR-585 and FBXO11, is an oncogenic lncRNA in the progression of gastric cancer. (PMID: 31829474) Zhang Y … Fang X (Cell biology international 2020) 3
- Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3
Products for LINC01436 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01436
- Origene Custom Protein Services for LINC01436
- Browse OriGene Inhibitory RNA Products For LINC01436
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01436
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01436
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01436
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01436
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01436
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01436
Sources for LINC01436 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB