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LINC01436 Gene(RNA Gene)

Long Intergenic Non-Protein Coding RNA 1436

GCID:
GC21P036005
GIFtS:
13
Genes Participants
UDN Logo

Aliases for LINC01436 Gene

Subcategory (RNA class) for LINC01436 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01436 Gene

  • Long Intergenic Non-Protein Coding RNA 1436 2 3 5

External Ids for LINC01436 Gene

Summaries for LINC01436 Gene

GeneCards Summary for LINC01436 Gene

LINC01436 (Long Intergenic Non-Protein Coding RNA 1436) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01436 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01436 Gene

Genomics for LINC01436 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for LINC01436 Gene

Promoters and enhancers for LINC01436 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH21I036059 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 40.7 +55.1 55118 2.5 CLOCK SMAD1 ARID4B SIN3A DMAP1 YY1 SLC30A9 POLR2B CBX5 E2F8 SETD4 LOC105369295 LINC01436 CBR1 LOC105369306 RNU6-992P
GH21I036095 Enhancer 1.3 Ensembl ENCODE dbSUPER 28.4 +92.9 92939 6.1 HDAC1 ATF1 PKNOX1 KLF17 BMI1 FEZF1 BATF TCF12 ZNF766 ZNF366 LINC01436 SETD4 DOPEY2 LOC100133286 CBR1 RNU6-992P LOC105369295 LOC105369306 CBR3 ENSG00000236119
GH21I036068 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 16.5 +65.2 65180 3 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 ZNF213 SP3 SP5 NFYC CBR1 SETD4 RIMKLBP1 LINC01436 LOC105369306 LOC100133286
GH21I036073 Enhancer 1 ENCODE dbSUPER 32 +68.1 68078 0.2 FOXA2 ARID4B DNMT3B ZSCAN9 RAD21 RARA YY1 SCRT2 THAP11 RXRA LINC01436 CBR1 SETD4 LOC100133286
GH21I036087 Enhancer 0.9 Ensembl ENCODE dbSUPER 28 +82.3 82322 1.2 CTCF HLF SCRT2 NFE2 FEZF1 ATF2 LINC01436 CBR1 LOC105369295 ENSG00000236119 LOC105369306 LOC100133286
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01436 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01436 Gene

Genomic Locations for LINC01436 Gene
chr21:36,005,320-36,008,295
(GRCh38/hg38)
Size:
2,976 bases
Orientation:
Plus strand
chr21:37,377,636-37,380,136
(GRCh37/hg19)

Genomic View for LINC01436 Gene

Genes around LINC01436 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01436 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01436 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01436 Gene

Proteins for LINC01436 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01436 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01436 Gene

Domains & Families for LINC01436 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01436 Gene

Function for LINC01436 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01436 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01436 Gene

Localization for LINC01436 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01436 Gene

Pathways & Interactions for LINC01436 Gene

SuperPathways for LINC01436 Gene

PathCards logo More details on SuperPathways for LINC01436
No Data Available

Interacting Proteins for LINC01436 Gene

Gene Ontology (GO) - Biological Process for LINC01436 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01436 Gene

Drugs & Compounds for LINC01436 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01436 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC01436 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01436 Gene

No ASD Table

Relevant External Links for LINC01436 Gene

GeneLoc Exon Structure for
LINC01436
ECgene alternative splicing isoforms for
LINC01436

Expression for LINC01436 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01436 Gene

mRNA expression in normal human tissues for LINC01436 Gene
mRNA expression by GTEx for LINC01436 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01436 Gene:

LINC01436
genes like me logo Genes that share expression patterns with LINC01436: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01436 Gene

Orthologs for LINC01436 Gene

Evolution for LINC01436 Gene

ENSEMBL:
Gene Tree for LINC01436 (if available)
TreeFam:
Gene Tree for LINC01436 (if available)

No data available for Orthologs for LINC01436 Gene

Paralogs for LINC01436 Gene

No data available for Paralogs for LINC01436 Gene

Variants for LINC01436 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LINC01436 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000169280 -- 36,007,345(+) G/A non_coding_transcript_variant
rs1000290929 -- 36,005,461(+) T/C non_coding_transcript_variant
rs1001123249 -- 36,006,033(+) G/T intron_variant
rs1001263896 -- 36,004,470(+) G/C upstream_transcript_variant
rs1001951477 -- 36,005,641(+) A/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01436 Gene

Variant ID Type Subtype PubMed ID
nsv3504 CNV insertion 18451855
nsv459247 CNV loss 19166990
nsv470899 CNV loss 18288195
nsv587461 CNV loss 21841781
nsv964547 CNV deletion 23825009

Additional Variant Information for LINC01436 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01436

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01436 Gene

Disorders for LINC01436 Gene

Additional Disease Information for LINC01436

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01436 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01436 Gene

Publications for LINC01436 Gene

  1. Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome. (PMID: 24932682) Rajpathak SN … Deobagkar DD (PloS one 2014) 2 3 58
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for LINC01436 Gene

Sources for LINC01436 Gene

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