Aliases for LINC01436 Gene

Data sources for LINC01436 Gene:

Subcategory (RNA class) for LINC01436 Gene

lncRNA

Aliases for LINC01436 Gene

External Ids for LINC01436 Gene

Summaries for LINC01436 Gene

GeneCards Summary for LINC01436 Gene

LINC01436 (Long Intergenic Non-Protein Coding RNA 1436) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01436 include Turner Syndrome.

Additional gene information for LINC01436 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01436 Gene

Genomics for LINC01436 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01436 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01436 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01436 Gene

Latest Assembly
chr21:36,004,564-36,008,894
(GRCh38/hg38)
Size:
4,331 bases
Orientation:
Plus strand

Previous Assembly
chr21:37,377,618-37,380,593
(GRCh37/hg19 by Entrez Gene)
Size:
2,976 bases
Orientation:
Plus strand

chr21:37,377,636-37,380,136
(GRCh37/hg19 by Ensembl)
Size:
2,501 bases
Orientation:
Plus strand

Genomic View for LINC01436 Gene

Genes around LINC01436 on UCSC Golden Path with GeneCards custom track
LINC01436 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01436 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01436 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01436 Gene

Proteins for LINC01436 Gene

Post-translational modifications for LINC01436 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01436 Gene

Domains & Families for LINC01436 Gene

Gene Families for LINC01436 Gene

genes like me logo Genes that share domains with LINC01436: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01436 Gene

Function for LINC01436 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01436 Gene

Localization for LINC01436 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01436 Gene

Pathways & Interactions for LINC01436 Gene

PathCards logo

SuperPathways for LINC01436 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01436 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01436 Gene

Drugs & Compounds for LINC01436 Gene

No Compound Related Data Available

Transcripts for LINC01436 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01436 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C2DF_9606 lncRNA 1523 3

RefSeq: NR_110419,

LncBook: HSALNT0273205,

LNCipedia: LINC01436:1,

URS000000BDFC_9606 lncRNA 1050 2

Ensembl: ENST00000457157 (view in UCSC) ,

LNCipedia: LINC01436:3,

URS00008B8DBF_9606 lncRNA 813 2

LNCipedia: LINC01436:2,

NONCODE: NONHSAT081928.2,

URS00009C3680_9606 lncRNA 811 2

LncBook: HSALNT0273206,

NONCODE: NONHSAT190933.1,

URS0001BF43F0_9606 lncRNA 2455 1

LncBook: HSALNT0273202,

LINC01436 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01436 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01436 Gene

No ASD Table

Relevant External Links for LINC01436 Gene

GeneLoc Exon Structure for
LINC01436

Expression for LINC01436 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01436 Gene

genes like me logo Genes that share expression patterns with LINC01436: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01436 Gene

Orthologs for LINC01436 Gene

Evolution for LINC01436 Gene

ENSEMBL:
Gene Tree for LINC01436 (if available)
TreeFam:
Gene Tree for LINC01436 (if available)

No data available for Orthologs for LINC01436 Gene

Paralogs for LINC01436 Gene

No data available for Paralogs for LINC01436 Gene

Variants for LINC01436 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01436 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01436 Gene

Variant ID Type Subtype PubMed ID
nsv3504 CNV insertion 18451855
nsv459247 CNV loss 19166990
nsv470899 CNV loss 18288195
nsv587461 CNV loss 21841781
nsv964547 CNV deletion 23825009

Additional Variant Information for LINC01436 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01436

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01436 Gene

Disorders for LINC01436 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01436 Gene - From: COP and GCD

Disorder Aliases PubMed IDs
turner syndrome
  • bonnevie-ullrich syndrome
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01436

genes like me logo Genes that share disorders with LINC01436: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01436 Gene

Publications for LINC01436 Gene

  1. Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome. (PMID: 24932682) Rajpathak SN … Deobagkar DD (PloS one 2014) 2 3
  2. LINC01436, regulating miR-585 and FBXO11, is an oncogenic lncRNA in the progression of gastric cancer. (PMID: 31829474) Zhang Y … Fang X (Cell biology international 2020) 3
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for LINC01436 Gene

Sources for LINC01436 Gene