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Aliases for LINC01435 Gene

Subcategory (RNA class) for LINC01435 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01435 Gene

  • Long Intergenic Non-Protein Coding RNA 1435 2 3 5
  • TCONS_00018040 3
  • RP11-215N21.1 3

External Ids for LINC01435 Gene

Previous GeneCards Identifiers for LINC01435 Gene

  • GC10M107757

Summaries for LINC01435 Gene

GeneCards Summary for LINC01435 Gene

LINC01435 (Long Intergenic Non-Protein Coding RNA 1435) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01435 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01435 Gene

Genomics for LINC01435 Gene

GeneHancer (GH) Regulatory Elements for LINC01435 Gene

Promoters and enhancers for LINC01435 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I108204 Enhancer 0.5 ENCODE 0.4 -6.7 -6729 0.2 SRF CTCF ZNF143 TRIM22 ZFP36 ZNF384 RAD21 LINC01435 LOC105378476
GH10I107913 Enhancer 1 Ensembl ENCODE dbSUPER 0.1 +283.2 283161 2.7 SMARCA5 MXI1 ZNF687 HLF ELF1 CEBPG DPF2 CEBPA IKZF1 POU5F1 GC10M107913 GC10M107701 LINC01435
GH10I107971 Enhancer 0.6 ENCODE 0.1 +226.0 225994 1.7 SP3 ZBTB21 JUNB FOXA1 HIC1 JUND GATA3 CREB1 CUX1 FOS GC10M107913 LINC01435
GH10I107952 Enhancer 0.3 ENCODE 0.1 +244.8 244828 0.6 REST GC10M107913 LINC01435
GH10I107834 Enhancer 0.2 FANTOM5 0.1 +363.8 363795 0 GC10M107701 GC10M107913 LINC01435
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01435 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01435 Gene

Genomic Locations for LINC01435 Gene
chr10:107,694,973-108,197,849
(GRCh38/hg38)
Size:
502,877 bases
Orientation:
Minus strand
chr10:109,517,591-109,871,360
(GRCh37/hg19)

Genomic View for LINC01435 Gene

Genes around LINC01435 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01435 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01435 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01435 Gene

Proteins for LINC01435 Gene

Post-translational modifications for LINC01435 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01435 Gene

Domains & Families for LINC01435 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01435 Gene

Function for LINC01435 Gene

Phenotypes From GWAS Catalog for LINC01435 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01435 Gene

Localization for LINC01435 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01435 Gene

Pathways & Interactions for LINC01435 Gene

SuperPathways for LINC01435 Gene

No Data Available

Interacting Proteins for LINC01435 Gene

Gene Ontology (GO) - Biological Process for LINC01435 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01435 Gene

Drugs & Compounds for LINC01435 Gene

No Compound Related Data Available

Transcripts for LINC01435 Gene

mRNA/cDNA for LINC01435 Gene

(21) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01435 Gene

No ASD Table

Relevant External Links for LINC01435 Gene

GeneLoc Exon Structure for
LINC01435
ECgene alternative splicing isoforms for
LINC01435

Expression for LINC01435 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01435 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01435 Gene:

LINC01435
genes like me logo Genes that share expression patterns with LINC01435: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01435 Gene

Orthologs for LINC01435 Gene

Evolution for LINC01435 Gene

ENSEMBL:
Gene Tree for LINC01435 (if available)
TreeFam:
Gene Tree for LINC01435 (if available)

No data available for Orthologs for LINC01435 Gene

Paralogs for LINC01435 Gene

No data available for Paralogs for LINC01435 Gene

Variants for LINC01435 Gene

Sequence variations from dbSNP and Humsavar for LINC01435 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000006642 -- 107,917,123(-) C/T intron_variant
rs1000009332 -- 107,905,864(-) AGAG/AG intron_variant
rs1000012030 -- 108,069,550(-) A/G upstream_transcript_variant
rs1000022220 -- 107,995,120(-) T/C intron_variant
rs1000030935 -- 108,049,236(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01435 Gene

Variant ID Type Subtype PubMed ID
dgv972n100 CNV loss 25217958
esv2658147 CNV deletion 23128226
esv2662856 CNV deletion 23128226
esv2667303 CNV deletion 23128226
esv27316 CNV loss 19812545
esv2740684 CNV deletion 23290073
esv2740696 CNV deletion 23290073
esv2761623 CNV loss 21179565
esv3546819 CNV deletion 23714750
esv3546821 CNV deletion 23714750
esv3624492 CNV loss 21293372
esv3624493 CNV loss 21293372
esv3624494 CNV loss 21293372
esv3624495 CNV loss 21293372
esv3891889 CNV gain 25118596
nsv1069077 CNV deletion 25765185
nsv1116658 CNV tandem duplication 24896259
nsv1133159 CNV tandem duplication 24896259
nsv1144517 CNV deletion 24896259
nsv518988 CNV loss 19592680
nsv7211 OTHER inversion 18451855
nsv825560 CNV loss 20364138

Additional Variant Information for LINC01435 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01435

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01435 Gene

Disorders for LINC01435 Gene

Additional Disease Information for LINC01435

No disorders were found for LINC01435 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01435 Gene

Publications for LINC01435 Gene

  1. Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome. (PMID: 24932682) Rajpathak SN … Deobagkar DD (PloS one 2014) 2 3 58

Products for LINC01435 Gene

Sources for LINC01435 Gene

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