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Aliases for LINC01433 Gene

Subcategory (RNA class) for LINC01433 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01433 Gene

  • Long Intergenic Non-Protein Coding RNA 1433 2 3 5
  • HCG2045830 3

External Ids for LINC01433 Gene

Summaries for LINC01433 Gene

GeneCards Summary for LINC01433 Gene

LINC01433 (Long Intergenic Non-Protein Coding RNA 1433) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01433 include Lung Cancer.

Additional gene information for LINC01433 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01433 Gene

Genomics for LINC01433 Gene

GeneHancer (GH) Regulatory Elements for LINC01433 Gene

Promoters and enhancers for LINC01433 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J004191 Enhancer 1.1 Ensembl ENCODE 650.7 -0.4 -373 2 PKNOX1 SMAD1 ATF1 ARNT TCF12 ZNF766 GATA2 ZFP91 ATF7 NCOA1 LINC01433 GC20M004182
GH20J004169 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 13.4 -21.3 -21327 5.1 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 GC20P004170 LINC01433 CDC25B ENSG00000229539 PANK2 MAVS SMOX GC20M004182
GH20J004165 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 13.4 -25.7 -25745 3.1 ELF3 ARID4B THRB ZSCAN9 THAP11 SP5 CEBPB ELF1 SSRP1 GLIS1 SMOX LINC01433 ENSG00000229539 PANK2 GC20P004170
GH20J004220 Enhancer 1.2 Ensembl ENCODE 0.3 +28.9 28874 2.3 PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 FOS SP5 MXD4 ADRA1D PRNP LINC01433
GH20J004225 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.3 +33.5 33463 2.3 CTCF JUN THRB RAD21 TEAD3 ZNF366 POLR2A ZNF143 FOSL2 FOS ADRA1D MAVS SLC4A11 LINC01433
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01433 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01433 Gene

Genomic Locations for LINC01433 Gene
chr20:4,193,065-4,195,953
(GRCh38/hg38)
Size:
2,889 bases
Orientation:
Plus strand
chr20:4,173,712-4,176,600
(GRCh37/hg19)
Size:
2,889 bases
Orientation:
Plus strand

Genomic View for LINC01433 Gene

Genes around LINC01433 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01433 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01433 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01433 Gene

Proteins for LINC01433 Gene

Post-translational modifications for LINC01433 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01433 Gene

Domains & Families for LINC01433 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01433 Gene

Function for LINC01433 Gene

Phenotypes From GWAS Catalog for LINC01433 Gene

Phenotypes for LINC01433 Gene

genes like me logo Genes that share phenotypes with LINC01433: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01433 Gene

Localization for LINC01433 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01433 Gene

Pathways & Interactions for LINC01433 Gene

SuperPathways for LINC01433 Gene

No Data Available

Interacting Proteins for LINC01433 Gene

Gene Ontology (GO) - Biological Process for LINC01433 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01433 Gene

Drugs & Compounds for LINC01433 Gene

No Compound Related Data Available

Transcripts for LINC01433 Gene

mRNA/cDNA for LINC01433 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01433 Gene

No ASD Table

Relevant External Links for LINC01433 Gene

GeneLoc Exon Structure for
LINC01433
ECgene alternative splicing isoforms for
LINC01433

Expression for LINC01433 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01433 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01433 Gene:

LINC01433
genes like me logo Genes that share expression patterns with LINC01433: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01433 Gene

Orthologs for LINC01433 Gene

Evolution for LINC01433 Gene

ENSEMBL:
Gene Tree for LINC01433 (if available)
TreeFam:
Gene Tree for LINC01433 (if available)

No data available for Orthologs for LINC01433 Gene

Paralogs for LINC01433 Gene

No data available for Paralogs for LINC01433 Gene

Variants for LINC01433 Gene

Sequence variations from dbSNP and Humsavar for LINC01433 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1001417181 -- 4,195,726(+) C/T non_coding_transcript_variant
rs1001423667 -- 4,194,889(+) C/A intron_variant
rs1001493743 -- 4,191,839(+) A/G upstream_transcript_variant
rs1001874268 -- 4,192,107(+) G/A upstream_transcript_variant
rs1002469012 -- 4,193,104(+) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01433 Gene

Variant ID Type Subtype PubMed ID
nsv833900 CNV loss 17160897

Additional Variant Information for LINC01433 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01433

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01433 Gene

Disorders for LINC01433 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01433 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
lung cancer
  • lung cancer, susceptibility to
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01433

genes like me logo Genes that share disorders with LINC01433: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01433 Gene

Publications for LINC01433 Gene

  1. Long non-coding RNA linc01433 promotes migration and invasion in non-small cell lung cancer. (PMID: 29532622) Qian B … Shi H (Thoracic cancer 2018) 2 3 58
  2. Functional role and mechanism of lncRNA LOC728228 in malignant 16HBE cells transformed by anti-benzopyrene-trans-7,8-dihydrodiol-9,10-epoxide. (PMID: 25820656) Hu G … Jiang Y (Molecular carcinogenesis 2015) 2 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for LINC01433 Gene

Sources for LINC01433 Gene

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