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Aliases for LINC01431 Gene

Subcategory (RNA class) for LINC01431 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01431 Gene

  • Long Intergenic Non-Protein Coding RNA 1431 2 3 5

External Ids for LINC01431 Gene

Summaries for LINC01431 Gene

GeneCards Summary for LINC01431 Gene

LINC01431 (Long Intergenic Non-Protein Coding RNA 1431) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01431 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01431 Gene

Genomics for LINC01431 Gene

GeneHancer (GH) Regulatory Elements for LINC01431 Gene

Promoters and enhancers for LINC01431 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J023356 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 650.7 -2.0 -1999 7.6 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 LINC01431 GZF1 NXT1 NAPB CSTL1
GH20J023352 Enhancer 0.5 Ensembl dbSUPER 0.4 +5.2 5226 0.2 ZNF362 ENSG00000234832 LOC105372572 CSTL1 NXT1 LINC01431
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01431 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01431 Gene

Genomic Locations for LINC01431 Gene
chr20:23,356,594-23,358,127
(GRCh38/hg38)
Size:
1,534 bases
Orientation:
Minus strand
chr20:23,337,231-23,338,753
(GRCh37/hg19)
Size:
1,523 bases
Orientation:
Minus strand

Genomic View for LINC01431 Gene

Genes around LINC01431 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01431 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01431 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01431 Gene

Proteins for LINC01431 Gene

Post-translational modifications for LINC01431 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01431 Gene

Domains & Families for LINC01431 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01431 Gene

Function for LINC01431 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01431 Gene

Localization for LINC01431 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01431 Gene

Pathways & Interactions for LINC01431 Gene

SuperPathways for LINC01431 Gene

No Data Available

Interacting Proteins for LINC01431 Gene

Gene Ontology (GO) - Biological Process for LINC01431 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01431 Gene

Drugs & Compounds for LINC01431 Gene

No Compound Related Data Available

Transcripts for LINC01431 Gene

mRNA/cDNA for LINC01431 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01431 Gene

No ASD Table

Relevant External Links for LINC01431 Gene

GeneLoc Exon Structure for
LINC01431
ECgene alternative splicing isoforms for
LINC01431

Expression for LINC01431 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01431 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01431 Gene:

LINC01431
genes like me logo Genes that share expression patterns with LINC01431: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01431 Gene

Orthologs for LINC01431 Gene

Evolution for LINC01431 Gene

ENSEMBL:
Gene Tree for LINC01431 (if available)
TreeFam:
Gene Tree for LINC01431 (if available)

No data available for Orthologs for LINC01431 Gene

Paralogs for LINC01431 Gene

No data available for Paralogs for LINC01431 Gene

Variants for LINC01431 Gene

Sequence variations from dbSNP and Humsavar for LINC01431 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000160812 -- 23,356,914(-) G/A non_coding_transcript_variant
rs1000212799 -- 23,356,599(-) T/G non_coding_transcript_variant
rs1002426026 -- 23,359,252(-) C/G upstream_transcript_variant
rs1002886733 -- 23,359,521(-) C/A upstream_transcript_variant
rs1003110234 -- 23,358,346(-) C/T upstream_transcript_variant

Additional Variant Information for LINC01431 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01431

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01431 Gene

Disorders for LINC01431 Gene

Additional Disease Information for LINC01431

No disorders were found for LINC01431 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01431 Gene

Publications for LINC01431 Gene

No publications were found for LINC01431 Gene.

Products for LINC01431 Gene

Sources for LINC01431 Gene

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