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Aliases for LINC01430 Gene

Subcategory (RNA class) for LINC01430 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01430 Gene

  • Long Intergenic Non-Protein Coding RNA 1430 2 3
  • Long Intergenic Non-Protein Coding RNA 1620 5
  • LINC01620 5

External Ids for LINC01430 Gene

Summaries for LINC01430 Gene

GeneCards Summary for LINC01430 Gene

LINC01430 (Long Intergenic Non-Protein Coding RNA 1430) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01430 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01430 Gene

Genomics for LINC01430 Gene

GeneHancer (GH) Regulatory Elements for LINC01430 Gene

Promoters and enhancers for LINC01430 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J044464 Enhancer 0.6 dbSUPER 650.7 +0.3 314 1 TFAP4 NFIA RXRA RAD21 ZKSCAN1 YY1 PPARGC1A SP1 JUND HSF1 LINC01430 LINC01620 GC20M044467 RPL37AP1 OSER1 PIGT MIR3646
GH20J044466 Enhancer 0.2 dbSUPER 650.7 -1.4 -1430 0.2 LINC01430 LINC01620 GC20M044467 RPL37AP1 PKIG
GH20J044397 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 10.3 +56.1 56094 22.8 HDGF PKNOX1 FOXA2 ARNT MLX ZFP64 ARID4B SIN3A YBX1 DMAP1 HNF4A MIR3646 SRSF6 FITM2 LINC01620 LINC01430 OSER1 SDC4 OSER1-DT
GH20J044392 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.5 +70.6 70586 4.9 FOXA2 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 PAF1 SP5 NFYC GC20P044393 HNF4A-AS1 OSER1 HNF4A LINC01620 LINC01430 OSER1-DT
GH20J044216 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.5 +246.5 246510 3.7 ARID4B ZNF48 ARID2 ZNF143 RUNX3 KLF13 DEK SP5 ZC3H11A REST OSER1 SRSF6 FITM2 LINC01430 LINC01620 OSER1-DT JPH2 GDAP1L1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01430 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01430 Gene

Genomic Locations for LINC01430 Gene
chr20:44,436,172-44,465,349
(GRCh38/hg38)
Size:
29,178 bases
Orientation:
Minus strand
chr20:43,077,417-43,078,732
(GRCh37/hg19)
Size:
1,316 bases
Orientation:
Minus strand

Genomic View for LINC01430 Gene

Genes around LINC01430 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01430 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01430 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01430 Gene

Proteins for LINC01430 Gene

Post-translational modifications for LINC01430 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01430 Gene

Domains & Families for LINC01430 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01430 Gene

Function for LINC01430 Gene

Phenotypes From GWAS Catalog for LINC01430 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01430 Gene

Localization for LINC01430 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01430 Gene

Pathways & Interactions for LINC01430 Gene

SuperPathways for LINC01430 Gene

No Data Available

Interacting Proteins for LINC01430 Gene

Gene Ontology (GO) - Biological Process for LINC01430 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01430 Gene

Drugs & Compounds for LINC01430 Gene

No Compound Related Data Available

Transcripts for LINC01430 Gene

mRNA/cDNA for LINC01430 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01430 Gene

No ASD Table

Relevant External Links for LINC01430 Gene

GeneLoc Exon Structure for
LINC01430
ECgene alternative splicing isoforms for
LINC01430

Expression for LINC01430 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01430 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01430 Gene:

LINC01430
genes like me logo Genes that share expression patterns with LINC01430: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01430 Gene

Orthologs for LINC01430 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01430 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20orf62 34
  • 77 (a)
OneToOne
Species where no ortholog for LINC01430 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01430 Gene

ENSEMBL:
Gene Tree for LINC01430 (if available)
TreeFam:
Gene Tree for LINC01430 (if available)

Paralogs for LINC01430 Gene

No data available for Paralogs for LINC01430 Gene

Variants for LINC01430 Gene

Sequence variations from dbSNP and Humsavar for LINC01430 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1001010059 -- 44,448,659(-) G/A downstream_transcript_variant
rs1001389502 -- 44,452,281(-) T/C upstream_transcript_variant
rs1002704953 -- 44,449,770(-) C/T intron_variant
rs1004121021 -- 44,448,976(-) G/A non_coding_transcript_variant
rs1004173424 -- 44,448,692(-) A/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01430 Gene

Variant ID Type Subtype PubMed ID
nsv586065 CNV gain 21841781
nsv1061719 CNV gain 25217958
esv3645910 CNV loss 21293372

Additional Variant Information for LINC01430 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01430

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01430 Gene

Disorders for LINC01430 Gene

Additional Disease Information for LINC01430

No disorders were found for LINC01430 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01430 Gene

Publications for LINC01430 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LINC01430 Gene

Sources for LINC01430 Gene

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