Aliases for LINC01429 Gene

Data sources for LINC01429 Gene:

RNA type for LINC01429 Gene

lncRNA

Aliases for LINC01429 Gene

External Ids for LINC01429 Gene

Summaries for LINC01429 Gene

GeneCards Summary for LINC01429 Gene

LINC01429 (Long Intergenic Non-Protein Coding RNA 1429) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01429 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01429 Gene

Genomics for LINC01429 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01429 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J051863 Enhancer 0.5 Ensembl 250.7 +0.9 928 0.6 ZIC2 GLIS1 YY2 ESRRA ZNF579 PPP1R10 SREBF1 LINC01429 piR-59425-021 ADNP RF00017-3275 SALL4 ZFP64
GH20J051862 Promoter/Enhancer 0.5 EPDnew Ensembl 250.7 +0.1 127 0.6 LINC01429 piR-59425-021 SALL4 RF00017-3275 ZFP64
GH20J051861 Enhancer 0.5 ENCODE 250.7 +1.3 1338 0 SMARCE1 GLIS1 ZNF24 ZNF579 PPP1R10 LINC01429 piR-59425-021 ADNP RF00017-3275 SALL4 ZFP64
GH20J051859 Enhancer 1 Ensembl ENCODE 0.7 +2.8 2813 1.6 ZNF600 ZNF580 ATF2 ZNF10 ZIC2 ZBTB10 ZNF217 CEBPB FEZF1 ZNF639 RF00017-3275 DPM1 ADNP ZFP64 PSMD10P1 LINC01429 SALL4
GH20J051810 Enhancer 1.1 Ensembl ENCODE 0.2 +51.4 51427 2.8 CEBPA CHD4 CEBPB DEK HOMEZ ZBTB7B EP300 THAP11 FOXA2 KDM6A ADNP SALL4 piR-50437-414 LINC01429 ZFP64
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01429 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01429 Gene

Latest Assembly
chr20:51,811,494-51,863,228
(GRCh38/hg38)
Size:
51,735 bases
Orientation:
Minus strand

Previous Assembly
chr20:50,448,336-50,479,452
(GRCh37/hg19 by Entrez Gene)
Size:
31,117 bases
Orientation:
Minus strand

chr20:50,448,336-50,479,451
(GRCh37/hg19 by Ensembl)
Size:
31,116 bases
Orientation:
Minus strand

Genomic View for LINC01429 Gene

Genes around LINC01429 on UCSC Golden Path with GeneCards custom track
LINC01429 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01429 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01429 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01429 Gene

Proteins for LINC01429 Gene

Post-translational modifications for LINC01429 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01429 Gene

Domains & Families for LINC01429 Gene

Gene Families for LINC01429 Gene

genes like me logo Genes that share domains with LINC01429: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01429 Gene

Function for LINC01429 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01429 Gene

Localization for LINC01429 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01429 Gene

Pathways & Interactions for LINC01429 Gene

PathCards logo

SuperPathways for LINC01429 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01429 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01429 Gene

Drugs & Compounds for LINC01429 Gene

No Compound Related Data Available

Transcripts for LINC01429 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01429 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075DB7B_9606 lncRNA 2327 3

RefSeq: NR_110016,

LNCipedia: LINC01429:1,

NONCODE: NONHSAT080348.2,

URS000061BAC5_9606 lncRNA 2329 2

Ensembl: ENST00000438154 (view in UCSC) ,

LNCipedia: LINC01429:2,

URS0001BE5CAD_9606 lncRNA 3959 1

LncBook: HSALNT0268816,

URS0001BF4687_9606 lncRNA 2791 1

LncBook: HSALNT0268821,

URS0001BD8E96_9606 lncRNA 2714 1

LncBook: HSALNT0268818,

LINC01429 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01429 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01429 Gene

No ASD Table

Relevant External Links for LINC01429 Gene

GeneLoc Exon Structure for
LINC01429

Expression for LINC01429 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01429 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01429

genes like me logo Genes that share expression patterns with LINC01429: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01429 Gene

Orthologs for LINC01429 Gene

Evolution for LINC01429 Gene

ENSEMBL:
Gene Tree for LINC01429 (if available)
TreeFam:
Gene Tree for LINC01429 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01429

No data available for Orthologs for LINC01429 Gene

Paralogs for LINC01429 Gene

No data available for Paralogs for LINC01429 Gene

Variants for LINC01429 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01429 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01429 Gene

Variant ID Type Subtype PubMed ID
esv2763233 CNV loss 21179565
esv3646071 CNV loss 21293372
nsv1114226 CNV deletion 24896259
nsv518686 CNV loss 19592680
nsv954058 CNV deletion 24416366

Additional Variant Information for LINC01429 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01429
Leiden Open Variation Database (LOVD)
LINC01429

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01429 Gene

Disorders for LINC01429 Gene

Additional Disease Information for LINC01429

No disorders were found for LINC01429 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01429 Gene

Publications for LINC01429 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LINC01429 Gene

Products for LINC01429 Gene

Sources for LINC01429 Gene