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Aliases for LINC01429 Gene

Subcategory (RNA class) for LINC01429 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01429 Gene

  • Long Intergenic Non-Protein Coding RNA 1429 2 3 5

External Ids for LINC01429 Gene

Summaries for LINC01429 Gene

GeneCards Summary for LINC01429 Gene

LINC01429 (Long Intergenic Non-Protein Coding RNA 1429) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01429 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01429 Gene

Genomics for LINC01429 Gene

GeneHancer (GH) Regulatory Elements for LINC01429 Gene

Promoters and enhancers for LINC01429 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I051861 Enhancer 0.4 ENCODE 550.8 +1.0 1023 0 SMARCE1 GLIS1 LINC01429 GC20M051835 SALL4
GH20I051859 Enhancer 0.9 ENCODE 0.8 +2.7 2686 1.2 PKNOX1 FEZF1 ZNF121 GLIS2 ZNF213 KLF7 FOS YY2 ZNF592 MAFF ADNP ZFP64 DPM1 LINC01429 GC20M051835 SALL4
GH20I051872 Enhancer 0.7 ENCODE 0.4 -9.2 -9164 0.2 PKNOX1 MZF1 SIN3A FEZF1 ZIC2 CTBP1 GATA3 ZSCAN5C PRDM10 TCF7L2 RNU7-6P LINC01429 RNU6-347P SALL4
GH20I051847 Enhancer 0.5 ENCODE 0.4 +14.7 14679 1.5 SIX4 ZNF121 GATA3 HLF NBN EZH2 RNU7-6P LINC01429 GC20M051835 SALL4
GH20I051887 Enhancer 0.6 ENCODE 0.3 -26.3 -26262 2.4 ZNF664 ZNF121 SP1 GATA3 ZSCAN4 POU5F1 ZSCAN29 PRDM1 ZBTB17 SALL4 RNU6-347P LINC01429
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01429 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01429 Gene

Genomic Locations for LINC01429 Gene
chr20:51,831,797-51,862,913
(GRCh38/hg38)
Size:
31,117 bases
Orientation:
Minus strand
chr20:50,448,336-50,479,451
(GRCh37/hg19)

Genomic View for LINC01429 Gene

Genes around LINC01429 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01429 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01429 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01429 Gene

Proteins for LINC01429 Gene

Post-translational modifications for LINC01429 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01429 Gene

Domains & Families for LINC01429 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01429 Gene

Function for LINC01429 Gene

Phenotypes From GWAS Catalog for LINC01429 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01429 Gene

Localization for LINC01429 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01429 Gene

Pathways & Interactions for LINC01429 Gene

SuperPathways for LINC01429 Gene

No Data Available

Interacting Proteins for LINC01429 Gene

Gene Ontology (GO) - Biological Process for LINC01429 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01429 Gene

Drugs & Compounds for LINC01429 Gene

No Compound Related Data Available

Transcripts for LINC01429 Gene

mRNA/cDNA for LINC01429 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01429 Gene

No ASD Table

Relevant External Links for LINC01429 Gene

GeneLoc Exon Structure for
LINC01429
ECgene alternative splicing isoforms for
LINC01429

Expression for LINC01429 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01429 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01429 Gene:

LINC01429
genes like me logo Genes that share expression patterns with LINC01429: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01429 Gene

Orthologs for LINC01429 Gene

Evolution for LINC01429 Gene

ENSEMBL:
Gene Tree for LINC01429 (if available)
TreeFam:
Gene Tree for LINC01429 (if available)

No data available for Orthologs for LINC01429 Gene

Paralogs for LINC01429 Gene

No data available for Paralogs for LINC01429 Gene

Variants for LINC01429 Gene

Sequence variations from dbSNP and Humsavar for LINC01429 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000005715 -- 51,831,477(-) C/T downstream_transcript_variant
rs1000121500 -- 51,858,411(-) C/T intron_variant
rs1000283798 -- 51,863,909(-) G/ upstream_transcript_variant
rs1000343698 -- 51,842,180(-) G/A intron_variant
rs1000509885 -- 51,835,264(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01429 Gene

Variant ID Type Subtype PubMed ID
esv2763233 CNV loss 21179565
esv3646071 CNV loss 21293372
nsv1114226 CNV deletion 24896259
nsv518686 CNV loss 19592680
nsv954058 CNV deletion 24416366

Additional Variant Information for LINC01429 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01429

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01429 Gene

Disorders for LINC01429 Gene

Additional Disease Information for LINC01429

No disorders were found for LINC01429 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01429 Gene

Publications for LINC01429 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC01429 Gene

Sources for LINC01429 Gene

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