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Aliases for LINC01428 Gene

Subcategory (RNA class) for LINC01428 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01428 Gene

  • Long Intergenic Non-Protein Coding RNA 1428 2 3 5

External Ids for LINC01428 Gene

Summaries for LINC01428 Gene

GeneCards Summary for LINC01428 Gene

LINC01428 (Long Intergenic Non-Protein Coding RNA 1428) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01428 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01428 Gene

Genomics for LINC01428 Gene

GeneHancer (GH) Regulatory Elements for LINC01428 Gene

Promoters and enhancers for LINC01428 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J007213 Enhancer 0.3 ENCODE 0.3 +39.9 39851 1 SP1 LINC01428 ENSG00000232271
GH20J007247 Enhancer 0.2 ENCODE 0.4 +5.7 5672 1.4 ENSG00000238102 LINC01428 ENSG00000232271
GH20J007146 Enhancer 0.8 ENCODE 0.1 +106.8 106790 1.1 FOXA2 ARID4B RAD21 RARA YY1 EGR1 MIXL1 HMG20B RXRA SP5 ENSG00000232271 LINC01428
GH20J007113 Enhancer 0.5 ENCODE 0.1 +140.2 140173 0.1 CTCF FOXA2 FOXA3 ZNF143 SMC3 EBF1 RAD21 ENSG00000232271 LINC01428
GH20J007195 Enhancer 0.2 ENCODE 0.2 +58.4 58353 0.2 LINC01428 ENSG00000232271
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01428 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01428 Gene

Genomic Locations for LINC01428 Gene
chr20:7,146,467-7,254,202
(GRCh38/hg38)
Size:
107,736 bases
Orientation:
Minus strand
chr20:7,127,114-7,234,849
(GRCh37/hg19)
Size:
107,736 bases
Orientation:
Minus strand

Genomic View for LINC01428 Gene

Genes around LINC01428 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01428 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01428 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01428 Gene

Proteins for LINC01428 Gene

Post-translational modifications for LINC01428 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01428 Gene

Domains & Families for LINC01428 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01428 Gene

Function for LINC01428 Gene

Phenotypes From GWAS Catalog for LINC01428 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01428 Gene

Localization for LINC01428 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01428 Gene

Pathways & Interactions for LINC01428 Gene

SuperPathways for LINC01428 Gene

No Data Available

Interacting Proteins for LINC01428 Gene

Gene Ontology (GO) - Biological Process for LINC01428 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01428 Gene

Drugs & Compounds for LINC01428 Gene

No Compound Related Data Available

Transcripts for LINC01428 Gene

mRNA/cDNA for LINC01428 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01428 Gene

No ASD Table

Relevant External Links for LINC01428 Gene

GeneLoc Exon Structure for
LINC01428
ECgene alternative splicing isoforms for
LINC01428

Expression for LINC01428 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01428 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01428 Gene:

LINC01428
genes like me logo Genes that share expression patterns with LINC01428: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01428 Gene

Orthologs for LINC01428 Gene

Evolution for LINC01428 Gene

ENSEMBL:
Gene Tree for LINC01428 (if available)
TreeFam:
Gene Tree for LINC01428 (if available)

No data available for Orthologs for LINC01428 Gene

Paralogs for LINC01428 Gene

No data available for Paralogs for LINC01428 Gene

Variants for LINC01428 Gene

Sequence variations from dbSNP and Humsavar for LINC01428 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000015989 -- 7,168,315(-) A/C intron_variant
rs1000035456 -- 7,171,891(-) T/G intron_variant
rs1000050501 -- 7,251,852(-) C/T intron_variant
rs1000077082 -- 7,166,721(-) G/C intron_variant
rs1000088263 -- 7,156,671(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01428 Gene

Variant ID Type Subtype PubMed ID
nsv833911 CNV gain 17160897
nsv3278 CNV insertion 18451855
nsv3277 CNV deletion 18451855
nsv180067 CNV deletion 16902084
nsv1062870 CNV gain 25217958
esv3893278 CNV loss 25118596
esv3645130 CNV loss 21293372
esv3645129 CNV loss 21293372
esv2674949 CNV deletion 23128226

Additional Variant Information for LINC01428 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01428

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01428 Gene

Disorders for LINC01428 Gene

Additional Disease Information for LINC01428

No disorders were found for LINC01428 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01428 Gene

Publications for LINC01428 Gene

  1. Association of a common nonsynonymous variant in GLUT9 with serum uric acid levels in old order amish. (PMID: 18759275) McArdle PF … Shuldiner AR (Arthritis and rheumatism 2008) 3 58

Products for LINC01428 Gene

Sources for LINC01428 Gene

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