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Aliases for LINC01427 Gene

Subcategory (RNA class) for LINC01427 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01427 Gene

  • Long Intergenic Non-Protein Coding RNA 1427 2 3 5

External Ids for LINC01427 Gene

Previous GeneCards Identifiers for LINC01427 Gene

  • GC20M022280

Summaries for LINC01427 Gene

GeneCards Summary for LINC01427 Gene

LINC01427 (Long Intergenic Non-Protein Coding RNA 1427) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01427 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01427 Gene

Genomics for LINC01427 Gene

GeneHancer (GH) Regulatory Elements for LINC01427 Gene

Promoters and enhancers for LINC01427 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I022288 Enhancer 0.4 ENCODE 0.4 -5.0 -5045 1.4 MNT MAFK LINC01427 ENSG00000270838
GH20I022339 Enhancer 0.8 ENCODE 0.2 -55.3 -55269 0.2 ELF3 CTCF ZNF384 RAD21 CC2D1A GATA3 ARID2 ZNF143 SMC3 NR2F6 FOXA2 ENSG00000270838 LINC01427
GH20I022341 Enhancer 0.4 ENCODE 0.2 -57.7 -57656 1 FOSL1 FOSL2 ENSG00000270838 LINC01427
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01427 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01427 Gene

Genomic Locations for LINC01427 Gene
chr20:22,263,065-22,284,029
(GRCh38/hg38)
Size:
20,965 bases
Orientation:
Minus strand
chr20:22,260,866-22,263,310
(GRCh37/hg19)

Genomic View for LINC01427 Gene

Genes around LINC01427 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01427 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01427 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01427 Gene

Proteins for LINC01427 Gene

Post-translational modifications for LINC01427 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01427 Gene

Domains & Families for LINC01427 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01427 Gene

Function for LINC01427 Gene

Phenotypes From GWAS Catalog for LINC01427 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01427 Gene

Localization for LINC01427 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01427 Gene

Pathways & Interactions for LINC01427 Gene

SuperPathways for LINC01427 Gene

No Data Available

Interacting Proteins for LINC01427 Gene

Gene Ontology (GO) - Biological Process for LINC01427 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01427 Gene

Drugs & Compounds for LINC01427 Gene

No Compound Related Data Available

Transcripts for LINC01427 Gene

mRNA/cDNA for LINC01427 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01427 Gene

No ASD Table

Relevant External Links for LINC01427 Gene

GeneLoc Exon Structure for
LINC01427
ECgene alternative splicing isoforms for
LINC01427

Expression for LINC01427 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01427 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01427 Gene:

LINC01427
genes like me logo Genes that share expression patterns with LINC01427: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01427 Gene

Orthologs for LINC01427 Gene

Evolution for LINC01427 Gene

ENSEMBL:
Gene Tree for LINC01427 (if available)
TreeFam:
Gene Tree for LINC01427 (if available)

No data available for Orthologs for LINC01427 Gene

Paralogs for LINC01427 Gene

No data available for Paralogs for LINC01427 Gene

Variants for LINC01427 Gene

Sequence variations from dbSNP and Humsavar for LINC01427 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000265707 -- 22,283,324(-) T/G upstream_transcript_variant
rs1000787378 -- 22,281,477(-) T/A intron_variant
rs1001081705 -- 22,280,243(-) A/T non_coding_transcript_variant
rs1001221985 -- 22,284,173(-) T/C upstream_transcript_variant
rs1001239067 -- 22,281,708(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01427 Gene

Variant ID Type Subtype PubMed ID
nsv1058137 CNV loss 25217958

Additional Variant Information for LINC01427 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01427

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01427 Gene

Disorders for LINC01427 Gene

Additional Disease Information for LINC01427

No disorders were found for LINC01427 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01427 Gene

Publications for LINC01427 Gene

No publications were found for LINC01427 Gene.

Products for LINC01427 Gene

Sources for LINC01427 Gene

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