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Aliases for LINC01426 Gene

Subcategory (RNA class) for LINC01426 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01426 Gene

  • Long Intergenic Non-Protein Coding RNA 1426 2 3 5
  • LincRNA-Uc002yug.2 3

External Ids for LINC01426 Gene

Summaries for LINC01426 Gene

GeneCards Summary for LINC01426 Gene

LINC01426 (Long Intergenic Non-Protein Coding RNA 1426) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01426 include Squamous Cell Carcinoma and Astrocytoma.

Additional gene information for LINC01426 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01426 Gene

Genomics for LINC01426 Gene

GeneHancer (GH) Regulatory Elements for LINC01426 Gene

Promoters and enhancers for LINC01426 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J034745 Promoter/Enhancer 1.5 Ensembl ENCODE 611.8 +0.3 282 1.9 ZNF652 CC2D1A CTCF ELF3 SP7 ZNF644 RAD21 KAT8 ARID2 ZNF600 LINC01426 CLIC6 PIR43744
GH21J034743 Enhancer 0.7 Ensembl ENCODE 600.7 -1.8 -1823 1.5 NCOA3 ZSCAN4 RFX1 ZNF217 ZNF687 LINC01426 CLIC6 LINC00160
GH21J034744 Enhancer 0.2 ENCODE 600.7 -0.8 -758 0.2 LINC01426 LINC00160
GH21J034794 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +61.6 61602 26.3 ELF3 CTCF ZNF148 CEBPG ZSCAN21 MAFK SP7 SP1 HNF1A PPARG LINC01426 FAM243A KCNE1 PIR43744 GC21M034823
GH21J034833 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +90.1 90138 4.8 MNT CEBPG RERE NFIB AHR MAFK TFE3 SP1 PPARG ZNF644 LOC102724584 ENSG00000286153 LINC01426 KCNE1 RCAN1 GC21M034823
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01426 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01426 Gene

Genomic Locations for LINC01426 Gene
chr21:34,745,757-34,784,886
(GRCh38/hg38)
Size:
39,130 bases
Orientation:
Plus strand
chr21:36,118,054-36,157,183
(GRCh37/hg19)
Size:
39,130 bases
Orientation:
Plus strand

Genomic View for LINC01426 Gene

Genes around LINC01426 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01426 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01426 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01426 Gene

Proteins for LINC01426 Gene

Post-translational modifications for LINC01426 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01426 Gene

Domains & Families for LINC01426 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01426 Gene

Function for LINC01426 Gene

Phenotypes From GWAS Catalog for LINC01426 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01426 Gene

Localization for LINC01426 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01426 Gene

Pathways & Interactions for LINC01426 Gene

PathCards logo

SuperPathways for LINC01426 Gene

No Data Available

Interacting Proteins for LINC01426 Gene

Gene Ontology (GO) - Biological Process for LINC01426 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01426 Gene

Drugs & Compounds for LINC01426 Gene

No Compound Related Data Available

Transcripts for LINC01426 Gene

mRNA/cDNA for LINC01426 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01426 Gene

No ASD Table

Relevant External Links for LINC01426 Gene

GeneLoc Exon Structure for
LINC01426
ECgene alternative splicing isoforms for
LINC01426

Expression for LINC01426 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01426 Gene:

LINC01426
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01426 Gene

Orthologs for LINC01426 Gene

Evolution for LINC01426 Gene

ENSEMBL:
Gene Tree for LINC01426 (if available)
TreeFam:
Gene Tree for LINC01426 (if available)

No data available for Orthologs for LINC01426 Gene

Paralogs for LINC01426 Gene

No data available for Paralogs for LINC01426 Gene

Variants for LINC01426 Gene

Sequence variations from dbSNP and Humsavar for LINC01426 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000125407 -- 34,758,422(+) G/T genic_downstream_transcript_variant, intron_variant
rs1000208182 -- 34,758,610(+) G/C/T genic_downstream_transcript_variant, intron_variant
rs1000229754 -- 34,776,174(+) C/A genic_downstream_transcript_variant, intron_variant
rs1000391880 -- 34,764,087(+) T/C genic_downstream_transcript_variant, intron_variant
rs1000396965 -- 34,782,567(+) T/G genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01426 Gene

Variant ID Type Subtype PubMed ID
nsv1055971 CNV gain 25217958
nsv459243 CNV loss 19166990
nsv587429 CNV loss 21841781

Additional Variant Information for LINC01426 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01426

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01426 Gene

Disorders for LINC01426 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC01426 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
squamous cell carcinoma
  • epidermoid carcinoma
astrocytoma
  • astrocytic tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01426

genes like me logo Genes that share disorders with LINC01426: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01426 Gene

Publications for LINC01426 Gene

  1. LincRNA-uc002yug.2 involves in alternative splicing of RUNX1 and serves as a predictor for esophageal cancer and prognosis. (PMID: 25486427) Wu H … Zhou Y (Oncogene 2015) 3 58
  2. Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis. (PMID: 25085501) Bunyavanich S … Weiss ST (BMC medical genomics 2014) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LINC01426 Gene

Sources for LINC01426 Gene

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