Aliases for LINC01426 Gene

Data sources for LINC01426 Gene:

RNA type for LINC01426 Gene

lncRNA

Aliases for LINC01426 Gene

External Ids for LINC01426 Gene

Summaries for LINC01426 Gene

GeneCards Summary for LINC01426 Gene

LINC01426 (Long Intergenic Non-Protein Coding RNA 1426) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01426 include Squamous Cell Carcinoma.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01426 Gene

Genomics for LINC01426 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01426 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J034745 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 261.8 +0.0 30 1.3 MYC ZNF654 ZNF600 CTCF REST DEK ELK1 TRIM22 BHLHE40 IRF2 LINC01426 HSALNG0132865 CLIC6 piR-32745
GH21J034743 Enhancer 0.5 ENCODE 250.7 -1.8 -1763 1.4 ZNF217 NCOA3 ZSCAN4 ZNF687 RFX1 HSALNG0132865 LINC01426 CLIC6 HSALNG0132867 LOC107985515
GH21J034744 Enhancer 0.2 ENCODE 250.7 -0.7 -710 0.2 HSALNG0132865 LINC01426 HSALNG0132867 CLIC6
GH21J034668 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 10 -74.7 -74687 5.2 EZH2 BCLAF1 BCL11A ZNF592 SIN3A BHLHE40 TBP FOXA2 EBF1 MAX CLIC6 HSALNG0132861 RCAN1 LINC01426 lnc-RUNX1-4 MN298114-127
GH21J034833 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +90.7 90738 5.9 JUND POLR2A CEBPA ZIC2 CHD4 YY1 MXD4 CEBPB MAX KMT2B ENSG00000286153 LOC102724584 LINC01426 KCNE1 RCAN1 lnc-RCAN1-5 HSALNG0132875 CLIC6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01426 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01426 Gene

Latest Assembly
chr21:34,745,709-34,787,307
(GRCh38/hg38)
Size:
41,599 bases
Orientation:
Plus strand

Previous Assembly
chr21:36,118,122-36,157,183
(GRCh37/hg19 by Entrez Gene)
Size:
39,062 bases
Orientation:
Plus strand

chr21:36,118,054-36,157,183
(GRCh37/hg19 by Ensembl)
Size:
39,130 bases
Orientation:
Plus strand

Genomic View for LINC01426 Gene

Genes around LINC01426 on UCSC Golden Path with GeneCards custom track
LINC01426 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01426 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01426 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01426 Gene

Proteins for LINC01426 Gene

Post-translational modifications for LINC01426 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01426 Gene

Domains & Families for LINC01426 Gene

Gene Families for LINC01426 Gene

genes like me logo Genes that share domains with LINC01426: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01426 Gene

Function for LINC01426 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01426 Gene

Localization for LINC01426 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01426 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01426 Gene

Pathways & Interactions for LINC01426 Gene

PathCards logo

SuperPathways for LINC01426 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01426 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01426 Gene

Drugs & Compounds for LINC01426 Gene

No Compound Related Data Available

Transcripts for LINC01426 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01426 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00005C00E8_9606 lncRNA 2632 4

Ensembl: ENST00000420877 (view in UCSC) ,

LncBook: HSALNT0273128,

LNCipedia: LINC01426:1,

NONCODE: NONHSAT081888.2,

URS000075B200_9606 lncRNA 779 4

RefSeq: NR_038886,

LncBook: HSALNT0273131,

LNCipedia: LINC01426:2,

NONCODE: NONHSAT081889.2,

URS000075E64A_9606 lncRNA 2567 2

RefSeq: NR_038885,

LNCipedia: LINC01426:11,

URS00002547BE_9606 lncRNA 769 2

Ensembl: ENST00000419921 (view in UCSC) ,

LNCipedia: LINC01426:4,

URS0000E648D7_9606 lncRNA 2547 1

Ensembl: ENST00000652751 (view in UCSC) ,

LINC01426 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01426 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01426 Gene

No ASD Table

Relevant External Links for LINC01426 Gene

GeneLoc Exon Structure for
LINC01426

Expression for LINC01426 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01426 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01426

genes like me logo Genes that share expression patterns with LINC01426: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01426 Gene

Orthologs for LINC01426 Gene

Evolution for LINC01426 Gene

ENSEMBL:
Gene Tree for LINC01426 (if available)
TreeFam:
Gene Tree for LINC01426 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01426

No data available for Orthologs for LINC01426 Gene

Paralogs for LINC01426 Gene

No data available for Paralogs for LINC01426 Gene

Variants for LINC01426 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01426 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01426 Gene

Variant ID Type Subtype PubMed ID
nsv1055971 CNV gain 25217958
nsv459243 CNV loss 19166990
nsv587429 CNV loss 21841781

Additional Variant Information for LINC01426 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01426
Leiden Open Variation Database (LOVD)
LINC01426

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01426 Gene

Disorders for LINC01426 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01426 Gene - From: LNC

Disorder Aliases PubMed IDs
squamous cell carcinoma
  • epidermoid carcinoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01426

genes like me logo Genes that share disorders with LINC01426: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01426 Gene

Publications for LINC01426 Gene

  1. LincRNA-uc002yug.2 involves in alternative splicing of RUNX1 and serves as a predictor for esophageal cancer and prognosis. (PMID: 25486427) Wu H … Zhou Y (Oncogene 2015) 3 72
  2. Long noncoding RNA LINC01426 promotes glioma progression through PI3K/AKT signaling pathway and serves as a prognostic biomarker. (PMID: 30338804) Wang SJ … Li R (European review for medical and pharmacological sciences 2018) 3
  3. Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis. (PMID: 25085501) Bunyavanich S … Weiss ST (BMC medical genomics 2014) 3
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for LINC01426 Gene

Sources for LINC01426 Gene