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Aliases for LINC01425 Gene

Subcategory (RNA class) for LINC01425 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01425 Gene

  • Long Intergenic Non-Protein Coding RNA 1425 2 3 5

External Ids for LINC01425 Gene

Summaries for LINC01425 Gene

GeneCards Summary for LINC01425 Gene

LINC01425 (Long Intergenic Non-Protein Coding RNA 1425) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01425 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01425 Gene

Genomics for LINC01425 Gene

GeneHancer (GH) Regulatory Elements for LINC01425 Gene

Promoters and enhancers for LINC01425 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J021749 Enhancer 0.2 FANTOM5 0.7 +2.3 2270 0.4 LINC01425 ENSG00000227075
GH21J021763 Enhancer 0.2 FANTOM5 0.4 +16.4 16414 0.4 LINC01425 ENSG00000227075
GH21J021860 Enhancer 0.2 ENCODE 0.1 +114.1 114059 0.9 ENSG00000227075 LINC01425
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01425 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01425 Gene

Genomic Locations for LINC01425 Gene
chr21:21,746,973-21,797,415
(GRCh38/hg38)
Size:
50,443 bases
Orientation:
Plus strand
chr21:23,119,293-23,169,735
(GRCh37/hg19)
Size:
50,443 bases
Orientation:
Plus strand

Genomic View for LINC01425 Gene

Genes around LINC01425 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01425 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01425 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01425 Gene

Proteins for LINC01425 Gene

Post-translational modifications for LINC01425 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01425 Gene

Domains & Families for LINC01425 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01425 Gene

Function for LINC01425 Gene

Phenotypes From GWAS Catalog for LINC01425 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01425 Gene

Localization for LINC01425 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01425 Gene

Pathways & Interactions for LINC01425 Gene

SuperPathways for LINC01425 Gene

No Data Available

Interacting Proteins for LINC01425 Gene

Gene Ontology (GO) - Biological Process for LINC01425 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01425 Gene

Drugs & Compounds for LINC01425 Gene

No Compound Related Data Available

Transcripts for LINC01425 Gene

mRNA/cDNA for LINC01425 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01425 Gene

No ASD Table

Relevant External Links for LINC01425 Gene

GeneLoc Exon Structure for
LINC01425
ECgene alternative splicing isoforms for
LINC01425

Expression for LINC01425 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01425 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01425 Gene:

LINC01425
genes like me logo Genes that share expression patterns with LINC01425: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01425 Gene

Orthologs for LINC01425 Gene

Evolution for LINC01425 Gene

ENSEMBL:
Gene Tree for LINC01425 (if available)
TreeFam:
Gene Tree for LINC01425 (if available)

No data available for Orthologs for LINC01425 Gene

Paralogs for LINC01425 Gene

No data available for Paralogs for LINC01425 Gene

Variants for LINC01425 Gene

Sequence variations from dbSNP and Humsavar for LINC01425 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000010565 -- 21,745,507(+) A/G upstream_transcript_variant
rs1000051378 -- 21,791,108(+) C/T intron_variant
rs1000094524 -- 21,771,405(+) A/G intron_variant
rs1000198938 -- 21,776,703(+) G/A intron_variant
rs1000208514 -- 21,763,802(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01425 Gene

Variant ID Type Subtype PubMed ID
nsv834062 CNV loss 17160897
nsv510498 OTHER sequence alteration 20534489
nsv483066 CNV gain 15286789
esv3893388 CNV loss 25118596
esv3557529 CNV deletion 23714750
esv3557528 CNV deletion 23714750
esv3416294 CNV insertion 20981092
esv3374153 CNV insertion 20981092
esv3306430 CNV mobile element insertion 20981092
esv2762096 CNV loss 21179565
esv2723247 CNV deletion 23290073
esv2673660 CNV deletion 23128226

Additional Variant Information for LINC01425 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01425

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01425 Gene

Disorders for LINC01425 Gene

Additional Disease Information for LINC01425

No disorders were found for LINC01425 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01425 Gene

Publications for LINC01425 Gene

No publications were found for LINC01425 Gene.

Products for LINC01425 Gene

Sources for LINC01425 Gene

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