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Aliases for LINC01424 Gene

Subcategory (RNA class) for LINC01424 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01424 Gene

  • Long Intergenic Non-Protein Coding RNA 1424 2 3 5

External Ids for LINC01424 Gene

Summaries for LINC01424 Gene

GeneCards Summary for LINC01424 Gene

LINC01424 (Long Intergenic Non-Protein Coding RNA 1424) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01424 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01424 Gene

Genomics for LINC01424 Gene

GeneHancer (GH) Regulatory Elements for LINC01424 Gene

Promoters and enhancers for LINC01424 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21I044801 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -0.3 -304 2.6 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 POLR2B E2F8 ZNF207 DEK UBE2G2 LINC01424 POFUT2 PTTG1IP GC21M045663
GH21I044800 Enhancer 0.6 ENCODE 550.8 -2.0 -1960 0.2 CTCF SAP130 L3MBTL2 ARID4B REST MIER2 RAD21 GABPA MLLT1 ZNF558 UBE2G2 LINC01424 GC21M045663
GH21I044803 Enhancer 0.3 ENCODE 550.8 +1.0 1037 0 THAP11 LINC01424 UBE2G2 GC21P044820
GH21I045589 Enhancer 1.6 FANTOM5 Ensembl ENCODE 14.6 +789.2 789203 3.5 HDGF PKNOX1 ARNT YBX1 ZNF2 ZBTB7B POLR2B ZNF207 ZNF143 ZNF548 LINC01694 ENSG00000228137 MCM3AP DIP2A MCM3AP-AS1 UBE2G2 POFUT2 COL6A1 ENSG00000215447 ENSG00000227438
GH21I043920 Enhancer 1.4 Ensembl ENCODE dbSUPER 14.6 -879.1 -879056 6.3 HDGF PKNOX1 FOXA2 SMAD1 ARNT ZNF143 FOS ZNF592 MEF2D SMARCA4 RRP1B PWP2 ENSG00000184441 LINC01424 ITGB2-AS1 TRAPPC10 AGPAT3 CSTB AATBC GC21M043920
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01424 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01424 Gene

Genomic Locations for LINC01424 Gene
chr21:44,802,241-44,804,717
(GRCh38/hg38)
Size:
2,477 bases
Orientation:
Plus strand
chr21:46,222,492-46,224,632
(GRCh37/hg19)

Genomic View for LINC01424 Gene

Genes around LINC01424 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01424 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01424 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01424 Gene

Proteins for LINC01424 Gene

Post-translational modifications for LINC01424 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01424 Gene

Domains & Families for LINC01424 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01424 Gene

Function for LINC01424 Gene

Phenotypes From GWAS Catalog for LINC01424 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01424 Gene

Localization for LINC01424 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01424 Gene

Pathways & Interactions for LINC01424 Gene

SuperPathways for LINC01424 Gene

No Data Available

Interacting Proteins for LINC01424 Gene

Gene Ontology (GO) - Biological Process for LINC01424 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01424 Gene

Drugs & Compounds for LINC01424 Gene

No Compound Related Data Available

Transcripts for LINC01424 Gene

mRNA/cDNA for LINC01424 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01424 Gene

No ASD Table

Relevant External Links for LINC01424 Gene

GeneLoc Exon Structure for
LINC01424
ECgene alternative splicing isoforms for
LINC01424

Expression for LINC01424 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01424 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01424 Gene:

LINC01424
genes like me logo Genes that share expression patterns with LINC01424: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01424 Gene

Orthologs for LINC01424 Gene

Evolution for LINC01424 Gene

ENSEMBL:
Gene Tree for LINC01424 (if available)
TreeFam:
Gene Tree for LINC01424 (if available)

No data available for Orthologs for LINC01424 Gene

Paralogs for LINC01424 Gene

No data available for Paralogs for LINC01424 Gene

Variants for LINC01424 Gene

Sequence variations from dbSNP and Humsavar for LINC01424 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000335181 -- 44,803,688(+) C/T intron_variant
rs1000930899 -- 44,802,058(+) T/C upstream_transcript_variant
rs1000986809 -- 44,801,883(+) G/A/T upstream_transcript_variant
rs1001291653 -- 44,804,685(+) C/T non_coding_transcript_variant
rs1001350629 -- 44,804,227(+) T/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01424 Gene

Variant ID Type Subtype PubMed ID
esv3647135 CNV loss 21293372
esv3647136 CNV loss 21293372
nsv459298 CNV loss 19166990
nsv587813 CNV loss 21841781

Additional Variant Information for LINC01424 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01424

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01424 Gene

Disorders for LINC01424 Gene

Additional Disease Information for LINC01424

No disorders were found for LINC01424 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01424 Gene

Publications for LINC01424 Gene

No publications were found for LINC01424 Gene.

Products for LINC01424 Gene

Sources for LINC01424 Gene

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