Aliases for LINC01423 Gene

Subcategory (RNA class) for LINC01423 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01423 Gene

  • Long Intergenic Non-Protein Coding RNA 1423 2 3 5
  • LINC01423 2 5 165
  • NONHSAG032840.2 91
  • HSALNG0133061 164

External Ids for LINC01423 Gene

Summaries for LINC01423 Gene

GeneCards Summary for LINC01423 Gene

LINC01423 (Long Intergenic Non-Protein Coding RNA 1423) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01423 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01423 Gene

Genomics for LINC01423 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01423 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J038333 Promoter/Enhancer 0.7 EPDnew dbSUPER 600.4 +12.6 12587 0.1 HNF4A SP1 LINC01423 KCNJ15 lnc-KCNJ15-1 ERG
GH21J038345 Enhancer 0.3 Ensembl 600.7 -0.1 -124 0.8 WT1 LINC01423 KCNJ15 LOC107985513 ERG
GH21J038348 Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 8 -4.9 -4879 5.2 CREB1 CTCF PRDM10 ZNF629 ZNF512 ZNF692 PRDM1 PATZ1 REST RAD21 LOC107985513 lnc-ERG-10 HMGN1 KCNJ15 LINC01423 ETS2 ERG
GH21J038342 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 7.5 +2.4 2415 1.9 PRDM10 ZNF629 ZNF692 ZNF600 SP1 ZNF639 ZXDB CTBP1 FOXA2 TSHZ1 KCNJ15 LINC01423 ERG lnc-KCNJ15-1
GH21J038322 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 5.7 +20.8 20827 6.2 ATF7 PRDM10 ZNF629 IKZF1 ZNF692 PATZ1 ZNF561 SCRT2 ZBTB44 CEBPB KCNJ15 LINC01423 lnc-KCNJ15-1 HSALNG0133057 ERG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01423 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01423 Gene

Genomic Locations for LINC01423 Gene
chr21:38,323,635-38,346,076
(GRCh38/hg38)
Size:
22,442 bases
Orientation:
Minus strand
chr21:39,695,557-39,705,343
(GRCh37/hg19)
Size:
9,787 bases
Orientation:
Minus strand

Genomic View for LINC01423 Gene

Genes around LINC01423 on UCSC Golden Path with GeneCards custom track
LINC01423 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01423 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01423 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01423 Gene

Proteins for LINC01423 Gene

Post-translational modifications for LINC01423 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01423 Gene

Domains & Families for LINC01423 Gene

Gene Families for LINC01423 Gene

genes like me logo Genes that share domains with LINC01423: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01423 Gene

Function for LINC01423 Gene

Phenotypes From GWAS Catalog for LINC01423 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01423 Gene

Localization for LINC01423 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01423 Gene

Pathways & Interactions for LINC01423 Gene

PathCards logo

SuperPathways for LINC01423 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01423 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01423 Gene

Drugs & Compounds for LINC01423 Gene

No Compound Related Data Available

Transcripts for LINC01423 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01423 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C33E_9606 lncRNA 621 5

HGNC: 50732,

RefSeq: NR_110545,

LncBook: HSALNT0273498,

LNCipedia: LINC01423:1,

NONCODE: NONHSAT191469.1,

URS000025999E_9606 lncRNA 608 4

Ensembl: ENST00000414189 (view in UCSC) ,

LncBook: HSALNT0273493,

LNCipedia: LINC01423:3,

NONCODE: NONHSAT082087.2,

URS000031106E_9606 lncRNA 423 4

Ensembl: ENST00000436845 (view in UCSC) ,

LncBook: HSALNT0273497,

LNCipedia: LINC01423:2,

NONCODE: NONHSAT082090.2,

URS00008B90BD_9606 lncRNA 395 3

LncBook: HSALNT0273496,

LNCipedia: LINC01423:4,

NONCODE: NONHSAT082089.2,

URS00009C377D_9606 lncRNA 859 1

NONCODE: NONHSAT191468.1,

LINC01423 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01423 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01423 Gene

No ASD Table

Relevant External Links for LINC01423 Gene

GeneLoc Exon Structure for
LINC01423

Expression for LINC01423 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01423 Gene

genes like me logo Genes that share expression patterns with LINC01423: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01423 Gene

Orthologs for LINC01423 Gene

Evolution for LINC01423 Gene

ENSEMBL:
Gene Tree for LINC01423 (if available)
TreeFam:
Gene Tree for LINC01423 (if available)

No data available for Orthologs for LINC01423 Gene

Paralogs for LINC01423 Gene

No data available for Paralogs for LINC01423 Gene

Variants for LINC01423 Gene

Additional dbSNP identifiers (rs#s) for LINC01423 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01423 Gene

Variant ID Type Subtype PubMed ID
nsv1058886 CNV gain 25217958
nsv834098 CNV gain 17160897

Additional Variant Information for LINC01423 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01423

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01423 Gene

Disorders for LINC01423 Gene

No disorders were found for LINC01423 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01423 Gene

Publications for LINC01423 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for LINC01423 Gene

Sources for LINC01423 Gene