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Aliases for LINC01423 Gene
Subcategory (RNA class) for LINC01423 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LINC01423 Gene
External Ids for LINC01423 Gene
- HGNC: 50732
- Entrez Gene: 102724678
- Ensembl: ENSG00000231231
Summaries for LINC01423 Gene
GeneCards Summary for LINC01423 Gene
LINC01423 (Long Intergenic Non-Protein Coding RNA 1423) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC01423 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01423 Gene
Genomics for LINC01423 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01423 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH21J038333 | Promoter/Enhancer | 0.7 | EPDnew dbSUPER | 600.4 | +12.6 | 12587 | 0.1 | HNF4A SP1 | LINC01423 KCNJ15 lnc-KCNJ15-1 ERG | |
| GH21J038345 | Enhancer | 0.3 | Ensembl | 600.7 | -0.1 | -124 | 0.8 | WT1 | LINC01423 KCNJ15 LOC107985513 ERG | |
| GH21J038348 | Enhancer | 1.5 | FANTOM5 ENCODE CraniofacialAtlas dbSUPER | 8 | -4.9 | -4879 | 5.2 | CREB1 CTCF PRDM10 ZNF629 ZNF512 ZNF692 PRDM1 PATZ1 REST RAD21 | LOC107985513 lnc-ERG-10 HMGN1 KCNJ15 LINC01423 ETS2 ERG | |
| GH21J038342 | Enhancer | 1.3 | FANTOM5 Ensembl ENCODE dbSUPER | 7.5 | +2.4 | 2415 | 1.9 | PRDM10 ZNF629 ZNF692 ZNF600 SP1 ZNF639 ZXDB CTBP1 FOXA2 TSHZ1 | KCNJ15 LINC01423 ERG lnc-KCNJ15-1 | |
| GH21J038322 | Enhancer | 1.3 | FANTOM5 Ensembl ENCODE dbSUPER | 5.7 | +20.8 | 20827 | 6.2 | ATF7 PRDM10 ZNF629 IKZF1 ZNF692 PATZ1 ZNF561 SCRT2 ZBTB44 CEBPB | KCNJ15 LINC01423 lnc-KCNJ15-1 HSALNG0133057 ERG |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01423 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01423 Gene
Genomic Locations for LINC01423 Gene
- chr21:38,323,635-38,346,076
- (GRCh38/hg38)
- Size:
- 22,442 bases
- Orientation:
- Minus strand
- chr21:39,695,557-39,705,343
- (GRCh37/hg19)
- Size:
- 9,787 bases
- Orientation:
- Minus strand
Genomic View for LINC01423 Gene
Genes around LINC01423 on UCSC Golden Path with GeneCards custom track
LINC01423 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 21q22.2 by HGNC
- 21q22.2 by Entrez Gene
- 21q22.2 by Ensembl
LINC01423 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01423 Gene
Proteins for LINC01423 Gene
Post-translational modifications for LINC01423 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01423
- Origene Custom Protein Services for LINC01423
No data available for DME Specific Peptides for LINC01423 Gene
Domains & Families for LINC01423 Gene
Gene Families for LINC01423 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01423 Gene
Function for LINC01423 Gene
Phenotypes From GWAS Catalog for LINC01423 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for LINC01423
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01423 Gene
Localization for LINC01423 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01423 Gene
Transcripts for LINC01423 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01423 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075C33E_9606 | lncRNA | 621 | 5 |
HGNC: 50732, RefSeq: NR_110545, LncBook: HSALNT0273498, LNCipedia: LINC01423:1, NONCODE: NONHSAT191469.1, |
| URS000025999E_9606 | lncRNA | 608 | 4 |
Ensembl: ENST00000414189 (view in UCSC) , LncBook: HSALNT0273493, LNCipedia: LINC01423:3, NONCODE: NONHSAT082087.2, |
| URS000031106E_9606 | lncRNA | 423 | 4 |
Ensembl: ENST00000436845 (view in UCSC) , LncBook: HSALNT0273497, LNCipedia: LINC01423:2, NONCODE: NONHSAT082090.2, |
| URS00008B90BD_9606 | lncRNA | 395 | 3 |
LncBook: HSALNT0273496, LNCipedia: LINC01423:4, NONCODE: NONHSAT082089.2, |
| URS00009C377D_9606 | lncRNA | 859 | 1 |
NONCODE: NONHSAT191468.1, |
LINC01423 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01423 Gene
- 3 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for LINC01423
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LINC01423 Gene
- GeneLoc Exon Structure for
- LINC01423
Expression for LINC01423 Gene
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01423 Gene
Orthologs for LINC01423 Gene
No data available for Orthologs for LINC01423 Gene
Paralogs for LINC01423 Gene
No data available for Paralogs for LINC01423 Gene
Variants for LINC01423 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| nsv1058886 | CNV | gain | 25217958 |
| nsv834098 | CNV | gain | 17160897 |
Additional Variant Information for LINC01423 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01423
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01423 Gene
Disorders for LINC01423 Gene
Additional Disease Information for LINC01423
No disorders were found for LINC01423 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01423 Gene
Publications for LINC01423 Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
Products for LINC01423 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01423
- Origene Custom Protein Services for LINC01423
- Browse OriGene Inhibitory RNA Products For LINC01423
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01423
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01423
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01423
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01423
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01423
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01423
Sources for LINC01423 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB