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Aliases for LINC01422 Gene

Subcategory (RNA class) for LINC01422 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01422 Gene

  • Long Intergenic Non-Protein Coding RNA 1422 2 3 5

External Ids for LINC01422 Gene

Previous GeneCards Identifiers for LINC01422 Gene

  • GC22P026790

Summaries for LINC01422 Gene

GeneCards Summary for LINC01422 Gene

LINC01422 (Long Intergenic Non-Protein Coding RNA 1422) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01422 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01422 Gene

Genomics for LINC01422 Gene

GeneHancer (GH) Regulatory Elements for LINC01422 Gene

Promoters and enhancers for LINC01422 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J026903 Enhancer 0.4 Ensembl ENCODE 650.7 -0.2 -162 0.3 LINC01422 RNU6-1066P PIR41460
GH22J026904 Enhancer 0.2 ENCODE 650.7 +0.3 341 0.2 LINC01422 RNU6-1066P PIR62274
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01422 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01422 Gene

Genomic Locations for LINC01422 Gene
chr22:26,903,292-26,920,611
(GRCh38/hg38)
Size:
17,320 bases
Orientation:
Plus strand
chr22:27,299,255-27,316,574
(GRCh37/hg19)
Size:
17,320 bases
Orientation:
Plus strand

Genomic View for LINC01422 Gene

Genes around LINC01422 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01422 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01422 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01422 Gene

Proteins for LINC01422 Gene

Post-translational modifications for LINC01422 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01422 Gene

Domains & Families for LINC01422 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01422 Gene

Function for LINC01422 Gene

Phenotypes From GWAS Catalog for LINC01422 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01422 Gene

Localization for LINC01422 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01422 Gene

Pathways & Interactions for LINC01422 Gene

SuperPathways for LINC01422 Gene

No Data Available

Interacting Proteins for LINC01422 Gene

Gene Ontology (GO) - Biological Process for LINC01422 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01422 Gene

Drugs & Compounds for LINC01422 Gene

No Compound Related Data Available

Transcripts for LINC01422 Gene

mRNA/cDNA for LINC01422 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01422 Gene

No ASD Table

Relevant External Links for LINC01422 Gene

GeneLoc Exon Structure for
LINC01422
ECgene alternative splicing isoforms for
LINC01422

Expression for LINC01422 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01422 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01422 Gene:

LINC01422
genes like me logo Genes that share expression patterns with LINC01422: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01422 Gene

Orthologs for LINC01422 Gene

Evolution for LINC01422 Gene

ENSEMBL:
Gene Tree for LINC01422 (if available)
TreeFam:
Gene Tree for LINC01422 (if available)

No data available for Orthologs for LINC01422 Gene

Paralogs for LINC01422 Gene

No data available for Paralogs for LINC01422 Gene

Variants for LINC01422 Gene

Sequence variations from dbSNP and Humsavar for LINC01422 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000065725 -- 26,919,232(+) T/C intron_variant
rs1000143687 -- 26,917,832(+) C/T intron_variant
rs1000199648 -- 26,914,129(+) T/A intron_variant
rs1000473849 -- 26,908,981(+) C/T intron_variant
rs1000506005 -- 26,914,839(+) C/G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01422 Gene

Variant ID Type Subtype PubMed ID
nsv7350 OTHER inversion 18451855
nsv510805 CNV deletion 20534489
nsv1072632 CNV deletion 25765185
esv995430 CNV gain 20482838
esv34168 CNV loss 18971310

Additional Variant Information for LINC01422 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01422

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01422 Gene

Disorders for LINC01422 Gene

Additional Disease Information for LINC01422

No disorders were found for LINC01422 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01422 Gene

Publications for LINC01422 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LINC01422 Gene

Sources for LINC01422 Gene

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