Aliases for LINC01416 Gene
Subcategory (RNA class) for LINC01416 Gene
non-coding RNA
Quality Score for this RNA gene is
3
External Ids for LINC01416 Gene
- HGNC: 51645
- Entrez Gene: 101927273
- Ensembl: ENSG00000260930
Summaries for LINC01416 Gene
GeneCards Summary for LINC01416 Gene
LINC01416 (Long Intergenic Non-Protein Coding RNA 1416) is an RNA Gene, and is affiliated with the non-coding RNA class.
Additional gene information for LINC01416 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01416 Gene
Genomics for LINC01416 Gene
GeneHancer (GH) Regulatory Elements for LINC01416 Gene
Promoters and enhancers for LINC01416 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH18I055907 | Enhancer | 0.6 | Ensembl ENCODE | 0.4 | +11.9 | 11926 | 2.4 | PRDM10 FEZF1 WT1 | GC18P055910 LINC01416 ENSG00000267327 | |
| GH18I055900 | Enhancer | 0.6 | VISTA UCNEbase | 0.4 | +19.1 | 19079 | 0.9 | LOC642484 GC18P055910 ENSG00000267327 LINC01416 | ||
| GH18I055983 | Enhancer | 0.9 | Ensembl ENCODE | 0.2 | -63.1 | -63137 | 0.5 | HDAC1 JUN CHAMP1 FOSL1 CTBP1 VEZF1 FOS NFE2 GATAD2A SMARCE1 | GC18P056005 LINC01416 ENSG00000267327 | |
| GH18I055988 | Enhancer | 0.8 | Ensembl ENCODE | 0.2 | -68.5 | -68525 | 1.4 | MEF2D MEIS2 PKNOX1 IKZF1 JUN CEBPB ZBTB40 NR2F2 | LOC642484 GC18P056005 LINC01416 ENSG00000267327 | |
| GH18I055997 | Enhancer | 0.7 | Ensembl ENCODE | 0.2 | -78.4 | -78376 | 3.1 | SP1 ZNF316 IKZF1 GABPA EZH2 | LOC642484 GC18P056005 LINC01416 ENSG00000267327 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around LINC01416 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for LINC01416 Gene
Genomic Locations for LINC01416 Gene
- chr18:55,881,688-55,920,199
- (GRCh38/hg38)
- Size:
- 38,512 bases
- Orientation:
- Minus strand
- chr18:53,548,919-53,587,430
- (GRCh37/hg19)
Genomic View for LINC01416 Gene
Genes around LINC01416 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 18q21.2 by Ensembl
- 18q21.2 by Entrez Gene
- 18q21.2 by HGNC
LINC01416 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01416 Gene
Proteins for LINC01416 Gene
Post-translational modifications for LINC01416 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for LINC01416
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01416
- Origene Custom Protein Services for LINC01416
- Search GeneTex for Proteins for LINC01416
No data available for DME Specific Peptides for LINC01416 Gene
Domains & Families for LINC01416 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01416 Gene
Function for LINC01416 Gene
Phenotypes From GWAS Catalog for LINC01416 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for LINC01416
-
- Search ViGene Biosciences for LINC01416
CRISPR Products
- Browse CRISPR knockouts for LINC01416
miRNA Products
- Search ViGene Biosciences for LINC01416
Inhibitory RNA Products
- Search ViGene Biosciences for LINC01416
Clone Products
- GenScript: Custom all cDNA clones Services for LINC01416
- VectorBuilder custom plasmid, inducible vectors for LINC01416
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LINC01416
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01416 Gene
Localization for LINC01416 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01416 Gene
Transcripts for LINC01416 Gene
mRNA/cDNA for LINC01416 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for LINC01416
miRNA Products
- Search ViGene Biosciences for LINC01416
Inhibitory RNA Products
- Search ViGene Biosciences for LINC01416
Clone Products
- GenScript: Custom all cDNA clones Services for LINC01416
- VectorBuilder custom plasmid, inducible vectors for LINC01416
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LINC01416
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Expression for LINC01416 Gene
NURSA nuclear receptor signaling pathways regulating expression of LINC01416 Gene:
LINC01416
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01416 Gene
Orthologs for LINC01416 Gene
No data available for Orthologs for LINC01416 Gene
Paralogs for LINC01416 Gene
No data available for Paralogs for LINC01416 Gene
Variants for LINC01416 Gene
| SNP ID | Clin | Chr 18 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000039471 | -- | 55,900,248(-) | T/C | intron_variant | |
| rs1000069876 | -- | 55,882,346(-) | A/G | non_coding_transcript_variant | |
| rs1000139203 | -- | 55,919,197(-) | T/G | intron_variant | |
| rs1000430067 | -- | 55,912,938(-) | C/T | intron_variant | |
| rs1000495692 | -- | 55,899,778(-) | T/C | intron_variant |
Additional Variant Information for LINC01416 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01416
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01416 Gene
Disorders for LINC01416 Gene
Additional Disease Information for LINC01416
No disorders were found for LINC01416 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01416 Gene
Publications for LINC01416 Gene
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
Products for LINC01416 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Human Proteins and Enzymes
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01416
- Origene Custom Protein Services for LINC01416
- Browse OriGene Inhibitory RNA Products For LINC01416
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01416
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01416
- GenScript: Custom all cDNA clones Services for LINC01416
- GenScript Custom Purified and Recombinant Proteins Services for LINC01416
- GenScript Custom Assay Services for LINC01416
- GenScript Custom overexpressing Cell Line Services for LINC01416
- Browse GenScript CRISPR for LINC01416
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for LINC01416
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
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- Browse Sino Biological ELISA Kits
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- Sino Biological Transfection Reagent
- Sino Biological Anti-His Tag Antibody
- Browse Antibodies at Cloud-Clone Corp.
- Browse Proteins at Cloud-Clone Corp.
- Browse Assay Kits at Cloud-Clone Corp.
- Browse Knockouts at Cloud-Clone Corp.
- Browse Knockins at Cloud-Clone Corp.
- Cloud-Clone Corp. disease models service
- Browse cDNA clones at Cloud-Clone Corp.
- Browse primers at Cloud-Clone Corp.
- Cloud-Clone Corp. primary cells service
- Cyagen custom Knockout/knockin (KOKI) mouse models for LINC01416
- VectorBuilder custom plasmid, inducible vectors for LINC01416
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LINC01416
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for LINC01416
- Search GeneTex for Proteins for LINC01416
- Search ViGene Biosciences for LINC01416
Sources for LINC01416 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
