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LINC01416 Gene(RNA Gene)

Long Intergenic Non-Protein Coding RNA 1416

GCID:
GC18M055881
GIFtS:
11
Genes Participants
UDN Logo

Aliases for LINC01416 Gene

Subcategory (RNA class) for LINC01416 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01416 Gene

  • Long Intergenic Non-Protein Coding RNA 1416 2 3 5

External Ids for LINC01416 Gene

Summaries for LINC01416 Gene

GeneCards Summary for LINC01416 Gene

LINC01416 (Long Intergenic Non-Protein Coding RNA 1416) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01416 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01416 Gene

Genomics for LINC01416 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for LINC01416 Gene

Promoters and enhancers for LINC01416 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J055907 Enhancer 0.6 Ensembl ENCODE 0.4 +11.9 11926 2.4 PRDM10 FEZF1 WT1 GC18P055910 LINC01416 ENSG00000267327
GH18J055900 Enhancer 0.6 VISTA UCNEbase 0.4 +19.1 19079 0.9 ENSG00000206129 ENSG00000267327 GC18P055910 LINC01416
GH18J055983 Enhancer 0.9 Ensembl ENCODE 0.2 -63.1 -63137 0.5 HDAC1 JUN CHAMP1 FOSL1 CTBP1 VEZF1 FOS NFE2 GATAD2A SMARCE1 GC18P056005 LINC01416 ENSG00000267327
GH18J055988 Enhancer 0.8 Ensembl ENCODE 0.2 -68.5 -68525 1.4 MEF2D MEIS2 PKNOX1 IKZF1 JUN CEBPB ZBTB40 NR2F2 ENSG00000206129 GC18P056005 LINC01416 ENSG00000267327
GH18J055997 Enhancer 0.7 Ensembl ENCODE 0.2 -78.4 -78376 3.1 SP1 ZNF316 IKZF1 GABPA EZH2 ENSG00000206129 GC18P056005 LINC01416 ENSG00000267327
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01416 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01416 Gene

Genomic Locations for LINC01416 Gene
chr18:55,881,688-55,920,199
(GRCh38/hg38)
Size:
38,512 bases
Orientation:
Minus strand
chr18:53,548,919-53,587,430
(GRCh37/hg19)
Size:
38,512 bases
Orientation:
Minus strand

Genomic View for LINC01416 Gene

Genes around LINC01416 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01416 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01416 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01416 Gene

Proteins for LINC01416 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01416 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01416 Gene

Domains & Families for LINC01416 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01416 Gene

Function for LINC01416 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01416 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01416 Gene

Localization for LINC01416 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01416 Gene

Pathways & Interactions for LINC01416 Gene

SuperPathways for LINC01416 Gene

PathCards logo More details on SuperPathways for LINC01416
No Data Available

Interacting Proteins for LINC01416 Gene

Gene Ontology (GO) - Biological Process for LINC01416 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01416 Gene

Drugs & Compounds for LINC01416 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01416 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC01416 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01416 Gene

No ASD Table

Relevant External Links for LINC01416 Gene

GeneLoc Exon Structure for
LINC01416
ECgene alternative splicing isoforms for
LINC01416

Expression for LINC01416 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01416 Gene

mRNA expression in normal human tissues for LINC01416 Gene
mRNA expression by GTEx for LINC01416 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01416 Gene:

LINC01416
genes like me logo Genes that share expression patterns with LINC01416: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01416 Gene

Orthologs for LINC01416 Gene

Evolution for LINC01416 Gene

ENSEMBL:
Gene Tree for LINC01416 (if available)
TreeFam:
Gene Tree for LINC01416 (if available)

No data available for Orthologs for LINC01416 Gene

Paralogs for LINC01416 Gene

No data available for Paralogs for LINC01416 Gene

Variants for LINC01416 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LINC01416 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000039471 -- 55,900,248(-) T/C intron_variant
rs1000069876 -- 55,882,346(-) A/G non_coding_transcript_variant
rs1000139203 -- 55,919,197(-) T/G intron_variant
rs1000430067 -- 55,912,938(-) C/T intron_variant
rs1000495692 -- 55,899,778(-) T/C intron_variant

Additional Variant Information for LINC01416 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01416

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01416 Gene

Disorders for LINC01416 Gene

Additional Disease Information for LINC01416

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01416 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01416 Gene

Publications for LINC01416 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01416 Gene

Sources for LINC01416 Gene

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