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Aliases for LINC01416 Gene
Subcategory (RNA class) for LINC01416 Gene
lncRNA
Aliases for LINC01416 Gene
External Ids for LINC01416 Gene
- HGNC: 51645
- NCBI Entrez Gene: 101927273
- Ensembl: ENSG00000260930
Summaries for LINC01416 Gene
GeneCards Summary for LINC01416 Gene
LINC01416 (Long Intergenic Non-Protein Coding RNA 1416) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC01416 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01416 Gene
Genomics for LINC01416 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01416 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH18J055997 | Promoter/Enhancer | 1 | Ensembl ENCODE CraniofacialAtlas | 250.7 | -0.2 | -196 | 3.2 | GABPA ZNF316 SP1 IKZF1 CTCF EZH2 | LINC01416 LOC642484 piR-60885-051 LOC107985164 TCF4 WDR7 | |
| GH18J056000 | Enhancer | 0.2 | ENCODE | 250.7 | -1.9 | -1886 | 0.2 | LINC01416 piR-60885-051 LOC107985164 TCF4 WDR7 | ||
| GH18J055988 | Enhancer | 0.7 | Ensembl ENCODE | 0.4 | +9.1 | 9071 | 2.6 | RFX1 ZBTB40 BHLHE40 MEIS2 CEBPB IKZF1 FOXJ2 PKNOX1 MEF2D NR2F2 | LOC642484 LINC01416 HSALNG0121710 LOC107985164 TCF4 WDR7 | |
| GH18J055983 | Enhancer | 0.7 | ENCODE | 0.4 | +15.2 | 15194 | 0.2 | IKZF1 VEZF1 FOSL1 NFE2 SMARCA4 HDAC2 JUND ZEB2 NR2F6 SP1 | LINC01416 HSALNG0121710 LOC107985164 TCF4 WDR7 | |
| GH18J056003 | Enhancer | 0.4 | Ensembl ENCODE | 0.4 | -5.1 | -5061 | 0.9 | EZH2 | LINC01416 piR-60885-051 LOC107985164 LOC642484 TCF4 WDR7 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01416 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01416 Gene
Latest Assembly
- chr18:55,881,687-55,998,379
- (GRCh38/hg38)
- Size:
- 116,693 bases
- Orientation:
- Minus strand
Previous Assembly
- chr18:53,548,919-53,587,430
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 38,512 bases
- Orientation:
- Minus strand
- chr18:53,548,919-53,587,430
- (GRCh37/hg19 by Ensembl)
- Size:
- 38,512 bases
- Orientation:
- Minus strand
Genomic View for LINC01416 Gene
Genes around LINC01416 on UCSC Golden Path with GeneCards custom track
LINC01416 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 18q21.2 by HGNC
- 18q21.2 by Entrez Gene
- 18q21.2 by Ensembl
LINC01416 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01416 Gene
Proteins for LINC01416 Gene
Post-translational modifications for LINC01416 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC01416 Gene
Domains & Families for LINC01416 Gene
Gene Families for LINC01416 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01416 Gene
Function for LINC01416 Gene
Phenotypes From GWAS Catalog for LINC01416 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01416 Gene
Localization for LINC01416 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01416 Gene
Transcripts for LINC01416 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01416 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000589E0C_9606 | lncRNA | 2314 | 3 |
Ensembl: ENST00000563553 (view in UCSC) , LNCipedia: LINC01416:1, NONCODE: NONHSAT059386.2, |
| URS0000EEF0CA_9606 | lncRNA | 3122 | 1 |
Ensembl: ENST00000654280 (view in UCSC) , |
| URS000075B97A_9606 | lncRNA | 2310 | 1 |
RefSeq: NR_110755, |
| URS0000EF0522_9606 | lncRNA | 1939 | 1 |
Ensembl: ENST00000655696 (view in UCSC) , |
| URS0000E9DC26_9606 | lncRNA | 2487 | 1 |
LncBook: HSALNT0251572, |
LINC01416 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01416 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC01416 Gene
- GeneLoc Exon Structure for
- LINC01416
Expression for LINC01416 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01416
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01416 Gene
Orthologs for LINC01416 Gene
No data available for Orthologs for LINC01416 Gene
Paralogs for LINC01416 Gene
No data available for Paralogs for LINC01416 Gene
Variants for LINC01416 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3893107 | CNV | gain | 25118596 |
Additional Variant Information for LINC01416 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01416
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01416 Gene
Disorders for LINC01416 Gene
Additional Disease Information for LINC01416
No disorders were found for LINC01416 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01416 Gene
Publications for LINC01416 Gene
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
No data available for Mastermind for LINC01416 Gene
Products for LINC01416 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01416
- Origene Custom Protein Services for LINC01416
- Browse OriGene Inhibitory RNA Products For LINC01416
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01416
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01416
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01416
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01416
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01416
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01416
Sources for LINC01416 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB