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LINC01416 (Long Intergenic Non-Protein Coding RNA 1416) is an RNA Gene, and is affiliated with the lncRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH18J055997 | Promoter/Enhancer | 1 | Ensembl ENCODE CraniofacialAtlas | 250.7 | -0.2 | -196 | 3.2 | GABPA ZNF316 SP1 IKZF1 CTCF EZH2 | LINC01416 LOC642484 piR-60885-051 LOC107985164 TCF4 WDR7 | |
GH18J056000 | Enhancer | 0.2 | ENCODE | 250.7 | -1.9 | -1886 | 0.2 | LINC01416 piR-60885-051 LOC107985164 TCF4 WDR7 | ||
GH18J055988 | Enhancer | 0.7 | Ensembl ENCODE | 0.4 | +9.1 | 9071 | 2.6 | RFX1 ZBTB40 BHLHE40 MEIS2 CEBPB IKZF1 FOXJ2 PKNOX1 MEF2D NR2F2 | LOC642484 LINC01416 HSALNG0121710 LOC107985164 TCF4 WDR7 | |
GH18J055983 | Enhancer | 0.7 | ENCODE | 0.4 | +15.2 | 15194 | 0.2 | IKZF1 VEZF1 FOSL1 NFE2 SMARCA4 HDAC2 JUND ZEB2 NR2F6 SP1 | LINC01416 HSALNG0121710 LOC107985164 TCF4 WDR7 | |
GH18J056003 | Enhancer | 0.4 | Ensembl ENCODE | 0.4 | -5.1 | -5061 | 0.9 | EZH2 | LINC01416 piR-60885-051 LOC107985164 LOC642484 TCF4 WDR7 |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS0000589E0C_9606 | lncRNA | 2314 | 3 |
Ensembl: ENST00000563553 (view in UCSC) , LNCipedia: LINC01416:1, NONCODE: NONHSAT059386.2, |
URS0000EEF0CA_9606 | lncRNA | 3122 | 1 |
Ensembl: ENST00000654280 (view in UCSC) , |
URS000075B97A_9606 | lncRNA | 2310 | 1 |
RefSeq: NR_110755, |
URS0000EF0522_9606 | lncRNA | 1939 | 1 |
Ensembl: ENST00000655696 (view in UCSC) , |
URS0000E9DC26_9606 | lncRNA | 2487 | 1 |
LncBook: HSALNT0251572, |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
esv3893107 | CNV | gain | 25118596 |
No disorders were found for LINC01416 Gene.