LINC01416 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1416

GC18M055881
GIFtS:
10
See more...

Aliases for LINC01416 Gene

Subcategory (RNA class) for LINC01416 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC01416 Gene

  • Long Intergenic Non-Protein Coding RNA 1416 2 3 5
  • LINC01416 2 5 165
  • NONHSAG023917.2 91

External Ids for LINC01416 Gene

Summaries for LINC01416 Gene

GeneCards Summary for LINC01416 Gene

LINC01416 (Long Intergenic Non-Protein Coding RNA 1416) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01416 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01416 Gene

Genomics for LINC01416 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01416 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J055997 Promoter/Enhancer 1 Ensembl ENCODE CraniofacialAtlas 600.7 -0.4 -444 3 EZH2 GABPA SP1 IKZF1 CTCF LOC107985164 LINC01416 LOC642484 piR-60885-051 ENSG00000267327 TCF4 WDR7
GH18J055983 Enhancer 0.9 Ensembl ENCODE 0.4 +14.9 14918 1.4 TEAD4 IKZF1 JUND MTA2 PHF21A MTA1 HDAC1 SOX6 EP300 CTBP1 LOC642484 LINC01416 LOC107985164 piR-50399-013 ENSG00000267327 TCF4 WDR7
GH18J055988 Enhancer 0.7 Ensembl ENCODE 0.4 +8.9 8911 2.6 RFX1 PKNOX1 FOXJ2 CEBPB MEF2D NR2F2 CEBPG BHLHE40 JUN MEIS2 LOC642484 LINC01416 LOC107985164 piR-50399-013 ENSG00000267327 TCF4 WDR7
GH18J056003 Enhancer 0.4 Ensembl ENCODE 0.4 -5.2 -5221 0.9 EZH2 LINC01416 LOC107985164 piR-60885-051 ENSG00000267327 LOC642484 TCF4 WDR7
GH18J055907 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 0.2 +90.2 90183 2.9 PRDM10 WT1 SPI1 FEZF1 TRIM28 CTCF LOC642484 ENSG00000267327 piR-37725-007 LINC01416 TCF4 WDR7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01416 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01416 Gene

Genomic Locations for LINC01416 Gene
chr18:55,881,688-55,998,219
(GRCh38/hg38)
Size:
116,532 bases
Orientation:
Minus strand
chr18:53,548,919-53,587,430
(GRCh37/hg19)
Size:
38,512 bases
Orientation:
Minus strand

Genomic View for LINC01416 Gene

Genes around LINC01416 on UCSC Golden Path with GeneCards custom track
LINC01416 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01416 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01416 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01416 Gene

Proteins for LINC01416 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01416 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01416 Gene

Domains & Families for LINC01416 Gene

Gene Families for LINC01416 Gene

HGNC:
genes like me logo Genes that share domains with LINC01416: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01416 Gene

Function for LINC01416 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01416 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01416 Gene

Localization for LINC01416 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01416 Gene

Pathways & Interactions for LINC01416 Gene

PathCards logo

SuperPathways for LINC01416 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01416 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01416 Gene

Drugs & Compounds for LINC01416 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01416 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01416 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000589E0C_9606 lncRNA 2310 3

Ensembl: ENST00000563553 (view in UCSC) ,

LNCipedia: LINC01416:1,

NONCODE: NONHSAT059386.2,

URS000075B97A_9606 lncRNA 2310 2

HGNC: 51645,

RefSeq: NR_110755,

URS0000EEF0CA_9606 lncRNA 3122 1

Ensembl: ENST00000654280 (view in UCSC) ,

URS0000EF0522_9606 lncRNA 1939 1

Ensembl: ENST00000655696 (view in UCSC) ,

LINC01416 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01416 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01416 Gene

No ASD Table

Relevant External Links for LINC01416 Gene

GeneLoc Exon Structure for
LINC01416

Expression for LINC01416 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01416 Gene

mRNA expression in normal human tissues for LINC01416 Gene
mRNA expression by GTEx for LINC01416 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01416

genes like me logo Genes that share expression patterns with LINC01416: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01416 Gene

Orthologs for LINC01416 Gene

Evolution for LINC01416 Gene

ENSEMBL:
Gene Tree for LINC01416 (if available)
TreeFam:
Gene Tree for LINC01416 (if available)

No data available for Orthologs for LINC01416 Gene

Paralogs for LINC01416 Gene

No data available for Paralogs for LINC01416 Gene

Variants for LINC01416 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC01416 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01416 Gene

Variant ID Type Subtype PubMed ID
esv3893107 CNV gain 25118596

Additional Variant Information for LINC01416 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01416

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01416 Gene

Disorders for LINC01416 Gene

Additional Disease Information for LINC01416

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01416 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01416 Gene

Publications for LINC01416 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC01416 Gene

Products for LINC01416 Gene

Sources for LINC01416 Gene