LINC01415 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1415

GC18M055776
GIFtS:
12
See more...

Aliases for LINC01415 Gene

Subcategory (RNA class) for LINC01415 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01415 Gene

  • Long Intergenic Non-Protein Coding RNA 1415 2 3 5
  • LINC01415 2 5 165
  • TCONS_00026208 2 3
  • NONHSAG023914.2 91
  • HSALNG0121698 164
  • HSALNG0121699 164
  • Lnc-TCF4-8 165

External Ids for LINC01415 Gene

Summaries for LINC01415 Gene

GeneCards Summary for LINC01415 Gene

LINC01415 (Long Intergenic Non-Protein Coding RNA 1415) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01415 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01415 Gene

Genomics for LINC01415 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01415 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01415 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01415 Gene

Genomic Locations for LINC01415 Gene
chr18:55,773,317-55,781,725
(GRCh38/hg38)
Size:
8,409 bases
Orientation:
Minus strand
chr18:53,443,958-53,448,952
(GRCh37/hg19)
Size:
4,995 bases
Orientation:
Minus strand

Genomic View for LINC01415 Gene

Genes around LINC01415 on UCSC Golden Path with GeneCards custom track
LINC01415 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01415 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01415 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01415 Gene

Proteins for LINC01415 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01415 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01415 Gene

Domains & Families for LINC01415 Gene

Gene Families for LINC01415 Gene

HGNC:
genes like me logo Genes that share domains with LINC01415: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01415 Gene

Function for LINC01415 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01415 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01415 Gene

Localization for LINC01415 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01415 Gene

Pathways & Interactions for LINC01415 Gene

PathCards logo

SuperPathways for LINC01415 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01415 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01415 Gene

Drugs & Compounds for LINC01415 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01415 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01415 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000042F8A9_9606 lncRNA 4071 4

Ensembl: ENST00000587320 (view in UCSC) ,

LncBook: HSALNT0251548,

LNCipedia: LINC01415:1,

NONCODE: NONHSAT059379.2,

URS00003983BE_9606 lncRNA 983 4

Ensembl: ENST00000588134 (view in UCSC) ,

LncBook: HSALNT0251550,

LNCipedia: LINC01415:2,

NONCODE: NONHSAT059380.2,

URS0000ABD80C_9606 lncRNA 6201 2

HGNC: 50709,

RefSeq: NR_145452,

URS0000ABD8B8_9606 lncRNA 5703 1

RefSeq: NR_145453,

URS0000ABD8CB_9606 lncRNA 5493 1

RefSeq: NR_145454,

LINC01415 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01415 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01415 Gene

No ASD Table

Relevant External Links for LINC01415 Gene

GeneLoc Exon Structure for
LINC01415

Expression for LINC01415 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01415 Gene

mRNA expression in normal human tissues for LINC01415 Gene
mRNA expression by GTEx for LINC01415 Gene
genes like me logo Genes that share expression patterns with LINC01415: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01415 Gene

Orthologs for LINC01415 Gene

Evolution for LINC01415 Gene

ENSEMBL:
Gene Tree for LINC01415 (if available)
TreeFam:
Gene Tree for LINC01415 (if available)

No data available for Orthologs for LINC01415 Gene

Paralogs for LINC01415 Gene

No data available for Paralogs for LINC01415 Gene

Variants for LINC01415 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC01415 Gene

Additional Variant Information for LINC01415 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01415

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01415 Gene

Disorders for LINC01415 Gene

Additional Disease Information for LINC01415

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for LINC01415 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01415 Gene

Publications for LINC01415 Gene

No publications were found for LINC01415 Gene.

ExternalLinks

View latest publications for LINC01415 gene in Mastermind

Products for LINC01415 Gene

Sources for LINC01415 Gene