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Aliases for LINC01415 Gene

Subcategory (RNA class) for LINC01415 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01415 Gene

  • Long Intergenic Non-Protein Coding RNA 1415 2 3 5
  • TCONS_00026208 3

External Ids for LINC01415 Gene

Summaries for LINC01415 Gene

GeneCards Summary for LINC01415 Gene

LINC01415 (Long Intergenic Non-Protein Coding RNA 1415) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01415 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01415 Gene

Genomics for LINC01415 Gene

GeneHancer (GH) Regulatory Elements for LINC01415 Gene

Promoters and enhancers for LINC01415 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J055778 Promoter/Enhancer 1.3 Ensembl ENCODE 656.4 +1.3 1326 4 PKNOX1 RAD21 ZNF335 GLIS2 ARID2 ZNF143 RCOR1 RUNX3 ZNF654 CEBPB LINC01415 ENSG00000267284 LOC105372130
GH18J055398 Promoter/Enhancer 2.9 UCNEbase EPDnew FANTOM5 Ensembl ENCODE dbSUPER 6.4 +378.4 378381 10.3 PKNOX1 ATF1 FEZF1 GLIS2 ZNF213 FOS ATF7 MAFF SMARCA4 GLIS1 TCF4 LINC01415 GC18P055423 GC18P055312
GH18J055584 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 5.3 +194.0 194029 5.8 PKNOX1 SIN3A ZNF2 IRF4 YY1 POLR2B ZNF766 ZNF213 ZNF143 KLF13 TCF4 GC18P055590 RPL21P126 LINC01929 LINC01415 LOC105372126 GC18M055559
GH18J055794 Enhancer 1.1 UCNEbase Ensembl ENCODE 6.2 -13.1 -13120 1.4 IRF2 CEBPB CEBPG ZSCAN29 GC18P055794 LINC01415 GC18P055806 LOC105372130
GH18J055747 Enhancer 1 ENCODE 5.8 +33.1 33114 1.4 PKNOX1 SMAD1 ATF1 ARNT NCOA2 TCF12 ZNF766 GATA2 ATF7 ZNF263 LINC01415 ENSG00000267284 LOC105372130
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01415 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01415 Gene

Genomic Locations for LINC01415 Gene
chr18:55,774,601-55,781,721
(GRCh38/hg38)
Size:
7,121 bases
Orientation:
Minus strand
chr18:53,443,958-53,448,952
(GRCh37/hg19)
Size:
4,995 bases
Orientation:
Minus strand

Genomic View for LINC01415 Gene

Genes around LINC01415 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01415 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01415 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01415 Gene

Proteins for LINC01415 Gene

Post-translational modifications for LINC01415 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01415 Gene

Domains & Families for LINC01415 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01415 Gene

Function for LINC01415 Gene

Phenotypes From GWAS Catalog for LINC01415 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01415 Gene

Localization for LINC01415 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01415 Gene

Pathways & Interactions for LINC01415 Gene

SuperPathways for LINC01415 Gene

No Data Available

Interacting Proteins for LINC01415 Gene

Gene Ontology (GO) - Biological Process for LINC01415 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01415 Gene

Drugs & Compounds for LINC01415 Gene

No Compound Related Data Available

Transcripts for LINC01415 Gene

mRNA/cDNA for LINC01415 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(5) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01415 Gene

No ASD Table

Relevant External Links for LINC01415 Gene

GeneLoc Exon Structure for
LINC01415
ECgene alternative splicing isoforms for
LINC01415

Expression for LINC01415 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01415 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01415 Gene:

LINC01415
genes like me logo Genes that share expression patterns with LINC01415: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01415 Gene

Orthologs for LINC01415 Gene

Evolution for LINC01415 Gene

ENSEMBL:
Gene Tree for LINC01415 (if available)
TreeFam:
Gene Tree for LINC01415 (if available)

No data available for Orthologs for LINC01415 Gene

Paralogs for LINC01415 Gene

No data available for Paralogs for LINC01415 Gene

Variants for LINC01415 Gene

Sequence variations from dbSNP and Humsavar for LINC01415 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000348615 -- 55,777,004(-) T/C non_coding_transcript_variant
rs1000681612 -- 55,775,340(-) C/T non_coding_transcript_variant
rs1000712128 -- 55,775,009(-) G/T non_coding_transcript_variant
rs1000912468 -- 55,782,596(-) T/A upstream_transcript_variant
rs1001343140 -- 55,782,243(-) T/C upstream_transcript_variant

Additional Variant Information for LINC01415 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01415

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01415 Gene

Disorders for LINC01415 Gene

Additional Disease Information for LINC01415

No disorders were found for LINC01415 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01415 Gene

Publications for LINC01415 Gene

No publications were found for LINC01415 Gene.

Products for LINC01415 Gene

Sources for LINC01415 Gene

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