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Aliases for LINC01413 Gene

Subcategory (RNA class) for LINC01413 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01413 Gene

  • Long Intergenic Non-Protein Coding RNA 1413 2 3 5

External Ids for LINC01413 Gene

Summaries for LINC01413 Gene

GeneCards Summary for LINC01413 Gene

LINC01413 (Long Intergenic Non-Protein Coding RNA 1413) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01413 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01413 Gene

Genomics for LINC01413 Gene

GeneHancer (GH) Regulatory Elements for LINC01413 Gene

Promoters and enhancers for LINC01413 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J057319 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.7 +3.2 3215 5.4 HDGF PKNOX1 SMAD1 ARNT POLR2B ZNF766 E2F8 ZNF263 SP3 ZNF592 LINC00926 ZNF280D LINC01413 NDUFB10P1
GH15J057310 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -6.8 -6809 4.3 HDAC1 ATF1 FOXA2 NFRKB TCF12 ZNF766 ATF7 ZBTB11 ZNF592 ATF4 GC15M057872 LINC00926 CGNL1 LINC01413
GH15J057326 Enhancer 0.6 ENCODE dbSUPER 0.4 +7.3 7300 0.2 HLF ZBTB33 NDUFB10P1 LINC00926 LINC01413
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01413 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01413 Gene

Genomic Locations for LINC01413 Gene
chr15:57,319,138-57,325,039
(GRCh38/hg38)
Size:
5,902 bases
Orientation:
Plus strand
chr15:57,611,336-57,616,106
(GRCh37/hg19)
Size:
4,771 bases
Orientation:
Plus strand

Genomic View for LINC01413 Gene

Genes around LINC01413 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01413 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01413 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01413 Gene

Proteins for LINC01413 Gene

Post-translational modifications for LINC01413 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01413 Gene

Domains & Families for LINC01413 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01413 Gene

Function for LINC01413 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01413 Gene

Localization for LINC01413 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01413 Gene

Pathways & Interactions for LINC01413 Gene

SuperPathways for LINC01413 Gene

No Data Available

Interacting Proteins for LINC01413 Gene

Gene Ontology (GO) - Biological Process for LINC01413 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01413 Gene

Drugs & Compounds for LINC01413 Gene

No Compound Related Data Available

Transcripts for LINC01413 Gene

mRNA/cDNA for LINC01413 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01413 Gene

No ASD Table

Relevant External Links for LINC01413 Gene

GeneLoc Exon Structure for
LINC01413
ECgene alternative splicing isoforms for
LINC01413

Expression for LINC01413 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01413 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01413 Gene:

LINC01413
genes like me logo Genes that share expression patterns with LINC01413: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01413 Gene

Orthologs for LINC01413 Gene

Evolution for LINC01413 Gene

ENSEMBL:
Gene Tree for LINC01413 (if available)
TreeFam:
Gene Tree for LINC01413 (if available)

No data available for Orthologs for LINC01413 Gene

Paralogs for LINC01413 Gene

No data available for Paralogs for LINC01413 Gene

Variants for LINC01413 Gene

Sequence variations from dbSNP and Humsavar for LINC01413 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1001009690 -- 57,317,560(+) G/T upstream_transcript_variant
rs1001057153 -- 57,317,368(+) C/T upstream_transcript_variant
rs1001238723 -- 57,321,893(+) A/G intron_variant
rs1001442903 -- 57,322,203(+) G/C intron_variant
rs1002882588 -- 57,324,329(+) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01413 Gene

Variant ID Type Subtype PubMed ID
esv3581726 CNV loss 25503493
nsv1045611 CNV gain 25217958
nsv1054547 CNV gain 25217958
nsv1116764 CNV tandem duplication 24896259
nsv7266 OTHER inversion 18451855
nsv833021 CNV gain 17160897

Additional Variant Information for LINC01413 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01413

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01413 Gene

Disorders for LINC01413 Gene

Additional Disease Information for LINC01413

No disorders were found for LINC01413 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01413 Gene

Publications for LINC01413 Gene

  1. A transcript finishing initiative for closing gaps in the human transcriptome. (PMID: 15197164) Sogayar MC … Ludwig-FAPESP Transcript Finishing Initiative (Genome research 2004) 3 58
  2. Characterization of a large population of mRNAs from human testis. (PMID: 7782076) Pawlak A … Guellaën G (Genomics 1995) 3 58

Products for LINC01413 Gene

Sources for LINC01413 Gene

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