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Aliases for LINC01412 Gene

Subcategory (RNA class) for LINC01412 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01412 Gene

  • Long Intergenic Non-Protein Coding RNA 1412 2 3 5

External Ids for LINC01412 Gene

Previous GeneCards Identifiers for LINC01412 Gene

  • GC02P144522
  • GC02P144523
  • GC02P144524
  • GC02P144525
  • GC02P144526
  • GC02P144527
  • GC02P144528
  • GC02P144529

Summaries for LINC01412 Gene

GeneCards Summary for LINC01412 Gene

LINC01412 (Long Intergenic Non-Protein Coding RNA 1412) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01412 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01412 Gene

Genomics for LINC01412 Gene

GeneHancer (GH) Regulatory Elements for LINC01412 Gene

Promoters and enhancers for LINC01412 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J144502 Promoter/Enhancer 3.3 VISTA UCNEbase EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 -8.1 -8052 23.6 HDGF PKNOX1 SMAD1 ARNT SIN3A FEZF1 ZNF2 IRF4 YY1 POLR2B ZEB2 GTDC1 ENSG00000275372 ZEB2-AS1 ENSG00000273537 LINC01412 ENSG00000277444 GC02P144532 GC02P144531 LOC105373656
GH02J144553 Enhancer 0.9 ENCODE 0.3 +31.6 31583 0.9 PKNOX1 ATF1 ARNT FEZF1 FOS ATF7 KLF13 TSHZ1 ZNF592 ATF4 ZEB2 GC02P144567 LINC01412
GH02J144567 Enhancer 0.8 UCNEbase ENCODE 0.2 +46.1 46050 0.4 NANOG POLR2A GC02P144567 ZEB2 LINC01412 TEX41
GH02J144527 Enhancer 0.2 dbSUPER 0.4 +6.3 6273 1.1 ZEB2 LINC01412 GC02P144567
GH02J144529 Enhancer 0.2 dbSUPER 0.4 +8.3 8266 0.5 ZEB2 LINC01412 GC02P144567
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01412 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01412 Gene

Genomic Locations for LINC01412 Gene
chr2:144,521,868-144,579,434
(GRCh38/hg38)
Size:
57,567 bases
Orientation:
Plus strand
chr2:145,324,002-145,337,001
(GRCh37/hg19)
Size:
13,000 bases
Orientation:
Plus strand

Genomic View for LINC01412 Gene

Genes around LINC01412 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01412 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01412 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01412 Gene

Proteins for LINC01412 Gene

Post-translational modifications for LINC01412 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01412 Gene

Domains & Families for LINC01412 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01412 Gene

Function for LINC01412 Gene

Phenotypes From GWAS Catalog for LINC01412 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01412 Gene

Localization for LINC01412 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01412 Gene

Pathways & Interactions for LINC01412 Gene

SuperPathways for LINC01412 Gene

No Data Available

Interacting Proteins for LINC01412 Gene

Gene Ontology (GO) - Biological Process for LINC01412 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01412 Gene

Drugs & Compounds for LINC01412 Gene

No Compound Related Data Available

Transcripts for LINC01412 Gene

mRNA/cDNA for LINC01412 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01412 Gene

No ASD Table

Relevant External Links for LINC01412 Gene

GeneLoc Exon Structure for
LINC01412
ECgene alternative splicing isoforms for
LINC01412

Expression for LINC01412 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01412 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01412 Gene:

LINC01412
genes like me logo Genes that share expression patterns with LINC01412: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01412 Gene

Orthologs for LINC01412 Gene

Evolution for LINC01412 Gene

ENSEMBL:
Gene Tree for LINC01412 (if available)
TreeFam:
Gene Tree for LINC01412 (if available)

No data available for Orthologs for LINC01412 Gene

Paralogs for LINC01412 Gene

No data available for Paralogs for LINC01412 Gene

Variants for LINC01412 Gene

Sequence variations from dbSNP and Humsavar for LINC01412 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs146048066 benign, Mowat-Wilson syndrome 144,520,357(+) A/G upstream_transcript_variant
rs910157741 uncertain-significance, Mowat-Wilson syndrome 144,520,074(+) A/G upstream_transcript_variant
rs1057521945 likely-benign, not specified 144,519,931(+) A/G upstream_transcript_variant
rs1000016658 -- 144,556,207(+) T/A intron_variant
rs1000033409 -- 144,562,353(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01412 Gene

Variant ID Type Subtype PubMed ID
nsv215243 CNV deletion 16902084
nsv213537 CNV deletion 16902084
nsv1127770 CNV deletion 24896259
nsv1123399 CNV deletion 24896259
esv3592772 CNV loss 21293372
esv3592768 CNV loss 21293372
esv2720916 CNV deletion 23290073
esv1358940 CNV deletion 17803354
esv1004757 CNV deletion 20482838
dgv2052n106 CNV deletion 24896259

Additional Variant Information for LINC01412 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01412

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01412 Gene

Disorders for LINC01412 Gene

Additional Disease Information for LINC01412

No disorders were found for LINC01412 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01412 Gene

Publications for LINC01412 Gene

No publications were found for LINC01412 Gene.

Products for LINC01412 Gene

Sources for LINC01412 Gene

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