Aliases for LINC01411 Gene

Subcategory (RNA class) for LINC01411 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01411 Gene

  • Long Intergenic Non-Protein Coding RNA 1411 2 3 5
  • LINC01411 2 170
  • RP11-267A15.1 3
  • NONHSAG042288 94
  • HSALNG0046752 169

External Ids for LINC01411 Gene

Summaries for LINC01411 Gene

GeneCards Summary for LINC01411 Gene

LINC01411 (Long Intergenic Non-Protein Coding RNA 1411) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01411 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01411 Gene

Genomics for LINC01411 Gene

GeneHancer (GH) Regulatory Elements for LINC01411 Gene

Promoters and enhancers for LINC01411 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J174336 Enhancer 1.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas 757.4 +1.5 1545 3.6 ZBTB6 ZNF362 SP7 ZSCAN21 PRDM1 GLIS2 ZIC2 ZBTB8A TCF7L2 PRDM10 LINC01411 ENSG00000253955 ENSG00000253244 MSX2 RF00017-5121
GH05J174354 Enhancer 1.1 Ensembl ENCODE 0.4 +19.7 19706 3.6 SMARCE1 ZNF217 MNT BACH1 SP7 SMARCA4 PRDM1 CEBPG TRIM24 FOSL2 NSG2 ENSG00000253244 LINC01411 RF00017-5121
GH05J174382 Enhancer 1.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas 0.2 +47.2 47187 3 ZNF785 SREBF1 ZNF362 ZNF280D SP7 ZSCAN21 GMEB1 GLIS2 PKNOX1 ZIC2 RF00017-5121 piR-44610-009 LINC01411
GH05J174370 Enhancer 1.1 Ensembl ENCODE 0.3 +35.6 35646 2 ZBTB6 TCF7L2 CTBP1 ZNF217 MNT SP7 ZSCAN21 FOSL2 GLIS2 PKNOX1 RF00017-5121 ENSG00000253244 LINC01411
GH05J174418 Promoter/Enhancer 1.2 ENCODE CraniofacialAtlas 0.2 +83.0 83012 1.3 CTCF ZBTB6 MAX RAD21 ZNF280D ELF3 SP7 ZSCAN21 PRDM1 REST piR-37750-005 piR-44610-009 RF00017-5121 LINC01411
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01411 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01411 Gene

Genomic Locations for LINC01411 Gene
chr5:174,336,295-174,532,458
(GRCh38/hg38)
Size:
196,164 bases
Orientation:
Plus strand

Genomic View for LINC01411 Gene

Genes around LINC01411 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01411 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01411 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01411 Gene

Proteins for LINC01411 Gene

Post-translational modifications for LINC01411 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01411 Gene

Domains & Families for LINC01411 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01411 Gene

Function for LINC01411 Gene

Phenotypes From GWAS Catalog for LINC01411 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01411 Gene

Localization for LINC01411 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01411 Gene

Pathways & Interactions for LINC01411 Gene

PathCards logo

SuperPathways for LINC01411 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01411 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01411 Gene

Drugs & Compounds for LINC01411 Gene

No Compound Related Data Available

Transcripts for LINC01411 Gene

mRNA/cDNA for LINC01411 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(15) RNACentral transcripts :
(8) LncBook transcripts :
(10) NONCODE transcripts :
(13) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01411 Gene

No ASD Table

Relevant External Links for LINC01411 Gene

GeneLoc Exon Structure for
LINC01411
ECgene alternative splicing isoforms for
LINC01411

Expression for LINC01411 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01411 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01411 Gene:

LINC01411
genes like me logo Genes that share expression patterns with LINC01411: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01411 Gene

Orthologs for LINC01411 Gene

Evolution for LINC01411 Gene

ENSEMBL:
Gene Tree for LINC01411 (if available)
TreeFam:
Gene Tree for LINC01411 (if available)

No data available for Orthologs for LINC01411 Gene

Paralogs for LINC01411 Gene

No data available for Paralogs for LINC01411 Gene

Variants for LINC01411 Gene

Sequence variations from dbSNP and Humsavar for LINC01411 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000019952 -- 174,395,749(+) G/A intron_variant
rs1000029356 -- 174,349,702(+) C/A intron_variant
rs1000058398 -- 174,476,932(+) G/A intron_variant
rs1000071532 -- 174,420,376(+) G/A intron_variant
rs1000111826 -- 174,477,225(+) T/C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01411 Gene

Variant ID Type Subtype PubMed ID
dgv3221n106 CNV tandem duplication 24896259
dgv3222n106 CNV tandem duplication 24896259
esv2731141 CNV deletion 23290073
esv2731142 CNV deletion 23290073
esv2731143 CNV deletion 23290073
esv2731144 CNV deletion 23290073
esv2731145 CNV deletion 23290073
esv2731146 CNV deletion 23290073
esv2742058 CNV deletion 23290073
esv2759394 CNV loss 17122850
esv3411347 CNV duplication 20981092
esv6931 CNV loss 19470904
nsv1117598 CNV deletion 24896259
nsv1140589 CNV deletion 24896259
nsv478356 CNV novel sequence insertion 20440878
nsv600298 CNV gain 21841781
nsv600325 CNV loss 21841781
nsv600326 CNV gain 21841781
nsv980754 CNV duplication 23825009

Additional Variant Information for LINC01411 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01411

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01411 Gene

Disorders for LINC01411 Gene

Additional Disease Information for LINC01411

No disorders were found for LINC01411 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01411 Gene

Publications for LINC01411 Gene

  1. Identification of prostate cancer LncRNAs by RNA-Seq. (PMID: 25422238) Hu CC … Ran LK (Asian Pacific journal of cancer prevention : APJCP 2014) 2 3 56
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

Products for LINC01411 Gene

Sources for LINC01411 Gene