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Aliases for LINC01410 Gene

Subcategory (RNA class) for LINC01410 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01410 Gene

  • Long Intergenic Non-Protein Coding RNA 1410 2 3 5

External Ids for LINC01410 Gene

Summaries for LINC01410 Gene

GeneCards Summary for LINC01410 Gene

LINC01410 (Long Intergenic Non-Protein Coding RNA 1410) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01410 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01410 Gene

Genomics for LINC01410 Gene

GeneHancer (GH) Regulatory Elements for LINC01410 Gene

Promoters and enhancers for LINC01410 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J062798 Promoter/Enhancer 1.5 Ensembl ENCODE 650.7 -0.3 -341 4.6 ARNT ARID4B SIN3A YBX1 DMAP1 YY1 ZNF143 MCM3 SP3 MCM5 LINC01410 RNA5SP283 GC09M062803 FAM27E4 FKBP4P7
GH09J062737 Enhancer 0.2 Ensembl 0.2 -63.5 -63460 1.6 FKBP4P7 LINC01410
GH09J062747 Enhancer 0.2 Ensembl 0.2 -53.3 -53260 1.2 FKBP4P7 LINC01410
GH09J062730 Enhancer 0.2 Ensembl 0.2 -71.1 -71060 0.4 FKBP4P7 LINC01410
GH09J062745 Enhancer 0.2 Ensembl 0.2 -55.1 -55060 2 FKBP4P7 LINC01410
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01410 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01410 Gene

Genomic Locations for LINC01410 Gene
chr9:62,801,461-62,813,486
(GRCh38/hg38)
Size:
12,026 bases
Orientation:
Plus strand
chr9:66,457,285-66,469,310
(GRCh37/hg19)
Size:
12,026 bases
Orientation:
Plus strand

Genomic View for LINC01410 Gene

Genes around LINC01410 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01410 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01410 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01410 Gene

Proteins for LINC01410 Gene

Post-translational modifications for LINC01410 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01410 Gene

Domains & Families for LINC01410 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01410 Gene

Function for LINC01410 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01410 Gene

Localization for LINC01410 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01410 Gene

Pathways & Interactions for LINC01410 Gene

SuperPathways for LINC01410 Gene

No Data Available

Interacting Proteins for LINC01410 Gene

Gene Ontology (GO) - Biological Process for LINC01410 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01410 Gene

Drugs & Compounds for LINC01410 Gene

No Compound Related Data Available

Transcripts for LINC01410 Gene

mRNA/cDNA for LINC01410 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01410 Gene

No ASD Table

Relevant External Links for LINC01410 Gene

GeneLoc Exon Structure for
LINC01410
ECgene alternative splicing isoforms for
LINC01410

Expression for LINC01410 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01410 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01410 Gene:

LINC01410
genes like me logo Genes that share expression patterns with LINC01410: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01410 Gene

Orthologs for LINC01410 Gene

Evolution for LINC01410 Gene

ENSEMBL:
Gene Tree for LINC01410 (if available)
TreeFam:
Gene Tree for LINC01410 (if available)

No data available for Orthologs for LINC01410 Gene

Paralogs for LINC01410 Gene

No data available for Paralogs for LINC01410 Gene

Variants for LINC01410 Gene

Sequence variations from dbSNP and Humsavar for LINC01410 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000151496 -- 62,800,251(+) G/A upstream_transcript_variant
rs1000604031 -- 62,805,777(+) G/C intron_variant
rs1004579643 -- 62,810,590(+) A/G non_coding_transcript_variant
rs1004606548 -- 62,812,624(+) G/T intron_variant
rs1004986515 -- 62,801,376(+) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01410 Gene

Variant ID Type Subtype PubMed ID
nsv973316 CNV duplication 23825009
nsv972736 CNV duplication 23825009
nsv951188 CNV duplication 24416366
nsv6544 CNV deletion 18451855
nsv438106 CNV loss 16468122
nsv428216 CNV loss 18775914
nsv1148524 CNV duplication 26484159
nsv1140978 CNV deletion 24896259
nsv1139973 CNV duplication 24896259
nsv1137444 CNV deletion 24896259
nsv1137443 CNV deletion 24896259
nsv1128477 CNV deletion 24896259
nsv1124420 CNV deletion 24896259
nsv1124419 CNV deletion 24896259
nsv1120173 OTHER inversion 24896259
nsv1117877 CNV deletion 24896259
nsv1115178 CNV deletion 24896259
nsv1110019 CNV deletion 24896259
nsv1078640 CNV duplication 25765185
esv3357978 OTHER inversion 20981092
esv29062 CNV gain 19812545
esv2581585 OTHER inversion 19546169
esv2545282 OTHER inversion 19546169
esv2489937 OTHER inversion 19546169
dgv4388e59 CNV duplication 20981092
dgv4027n106 CNV deletion 24896259
dgv134n16 OTHER inversion 17901297

Additional Variant Information for LINC01410 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01410

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01410 Gene

Disorders for LINC01410 Gene

Additional Disease Information for LINC01410

No disorders were found for LINC01410 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01410 Gene

Publications for LINC01410 Gene

No publications were found for LINC01410 Gene.

Products for LINC01410 Gene

Sources for LINC01410 Gene

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