Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC01405 Gene

Subcategory (RNA class) for LINC01405 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01405 Gene

  • Long Intergenic Non-Protein Coding RNA 1405 2 3 5

External Ids for LINC01405 Gene

Summaries for LINC01405 Gene

GeneCards Summary for LINC01405 Gene

LINC01405 (Long Intergenic Non-Protein Coding RNA 1405) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01405 include Breast Cancer.

Additional gene information for LINC01405 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01405 Gene

Genomics for LINC01405 Gene

GeneHancer (GH) Regulatory Elements for LINC01405 Gene

Promoters and enhancers for LINC01405 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J110935 Promoter/Enhancer 1.3 Ensembl ENCODE 624.7 +0.5 497 2.2 SP1 CTCF ZSCAN21 AHR KLF14 RAD21 DPF2 ZIC2 ZNF143 REST LINC01405 GC12M110942 GC12P110917
GH12J110933 Enhancer 0.8 ENCODE dbSUPER 600.7 -2.0 -1979 1.7 MLLT1 FOSL2 CEBPB SP1 ZNF23 JUND ZBTB17 ZKSCAN1 FOS LINC01405 ATXN2 ADAM1A MYL2 GC12P110917
GH12J110928 Enhancer 1.6 VISTA Ensembl ENCODE dbSUPER 15.7 -6.5 -6472 4.6 CTCF CDC5L MCM2 PRDM1 CREB1 TARDBP REST ZSCAN4 ATF7 ZNF239 IFT81 LINC01405 MAPKAPK5 C12orf76 RPS2P41 ATXN2 PPP1CC MYL2 GC12P110917
GH12J111055 Enhancer 1.9 VISTA UCNEbase FANTOM5 ENCODE 8.8 +120.6 120606 2.9 ZNF473 KLF14 ZNF548 MLLT1 EGR1 ZNF547 IKZF1 CREB1 ZNF600 IKZF2 ADAM1A ATXN2 IFT81 MAPKAPK5 PCNPP1 CUX2 BRAP ATXN2-AS ANAPC7 MYL2
GH12J110948 Enhancer 0.5 ENCODE 23.4 +11.7 11667 0.2 CTBP1 DPF2 CUX1 GATA3 JUND SMARCE1 LINC01405 MYL2 GC12M110942 LOC105369980
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01405 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01405 Gene

Genomic Locations for LINC01405 Gene
chr12:110,936,585-110,958,208
(GRCh38/hg38)
Size:
21,624 bases
Orientation:
Plus strand
chr12:111,374,389-111,396,012
(GRCh37/hg19)
Size:
21,624 bases
Orientation:
Plus strand

Genomic View for LINC01405 Gene

Genes around LINC01405 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01405 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01405 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01405 Gene

Proteins for LINC01405 Gene

Post-translational modifications for LINC01405 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01405 Gene

Domains & Families for LINC01405 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01405 Gene

Function for LINC01405 Gene

Phenotypes From GWAS Catalog for LINC01405 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01405 Gene

Localization for LINC01405 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01405 Gene

Pathways & Interactions for LINC01405 Gene

PathCards logo

SuperPathways for LINC01405 Gene

No Data Available

Interacting Proteins for LINC01405 Gene

Gene Ontology (GO) - Biological Process for LINC01405 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01405 Gene

Drugs & Compounds for LINC01405 Gene

No Compound Related Data Available

Transcripts for LINC01405 Gene

mRNA/cDNA for LINC01405 Gene

(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01405 Gene

No ASD Table

Relevant External Links for LINC01405 Gene

GeneLoc Exon Structure for
LINC01405
ECgene alternative splicing isoforms for
LINC01405

Expression for LINC01405 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01405 Gene:

LINC01405
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01405 Gene

Orthologs for LINC01405 Gene

Evolution for LINC01405 Gene

ENSEMBL:
Gene Tree for LINC01405 (if available)
TreeFam:
Gene Tree for LINC01405 (if available)

No data available for Orthologs for LINC01405 Gene

Paralogs for LINC01405 Gene

No data available for Paralogs for LINC01405 Gene

Variants for LINC01405 Gene

Sequence variations from dbSNP and Humsavar for LINC01405 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000471086 -- 110,936,361(+) G/C upstream_transcript_variant
rs1000631617 -- 110,936,086(+) T/G upstream_transcript_variant
rs1001351267 -- 110,937,539(+) C/T downstream_transcript_variant
rs1001405066 -- 110,937,249(+) C/T non_coding_transcript_variant
rs1001451201 -- 110,936,187(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01405 Gene

Variant ID Type Subtype PubMed ID
esv3630744 CNV gain 21293372

Additional Variant Information for LINC01405 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01405

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01405 Gene

Disorders for LINC01405 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01405 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
breast cancer
  • breast tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01405

genes like me logo Genes that share disorders with LINC01405: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01405 Gene

Publications for LINC01405 Gene

No publications were found for LINC01405 Gene.

Products for LINC01405 Gene

Sources for LINC01405 Gene

Content
Loading form....